try ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_coreg.mac
On 06/09/2016 06:21 PM, HARI GURAGAIN wrote: > Dear Douglas, > > The executable is not working as it says ‘Library not loaded: > @executable_path/../lib/gcc/lib/libgomp.1.dylib’ > Referenced from: /Applications/freesurfer/bin/mri_coreg.mac > Reason: image not found > Trace/BPT trap:5 > > I am currently using the freeview: Version 1.0 and the operating system is: > OS X EI Captain Version: 10.11.5 > I wonder if the file you pointed works for the mac? Should I reinstall the > freeview? > Any help would be greatly appreciated. > > Thank you, > > Hari > > >> On Jun 9, 2016, at 4:28 PM, Douglas N Greve <gr...@nmr.mgh.harvard.edu> >> wrote: >> >> No, it is not the same command line. If you run it without args, it will >> give you some info, but it is basically >> >> mri_coreg --mov vol1.nii --targ vol2.nii --reg v1to2.lta >> >> >> On 06/09/2016 05:22 PM, HARI GURAGAIN wrote: >>> Thank you Douglas. >>> One more thing: Is there any syntax how to use it? I wonder if it is same >>> as the mri_robust_register? >>> >>> >>>> On Jun 9, 2016, at 3:43 PM, Douglas N Greve <gr...@nmr.mgh.harvard.edu> >>>> wrote: >>>> >>>> I don't think robust register will do cross-modal. You may be better off >>>> using mri_coreg, which you can get from here >>>> >>>> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_coreg >>>> >>>> >>>> On 06/09/2016 01:58 PM, HARI GURAGAIN wrote: >>>>> Dear Freesurfer community, >>>>> >>>>> I am relatively new to this community. >>>>> >>>>> I was trying to register the CT image and the MRI images (MRI as a the >>>>> target volume and CT as the movable volume). I used the >>>>> mri_robust_register to to do the registration as below: >>>>> >>>>> /mri_robust_register --mov vol1.nii --dst vol2.nii --lta v1to2.lta >>>>> --mapmov v1to2.nii --weights v1to2-weights.mii --iscale —satit / >>>>> >>>>> The problem is that: after register, the new image (v1to2.nii) is not >>>>> exactly aligned with the original MRI image (vol2.nii). It gives a >>>>> very different output. I wonder if I am missing anything here or I >>>>> need to do some extra steps after the above command in order to get >>>>> the correct alignment of the two images. I was hoping to get the >>>>> resultant image should be well orient with the target volume image >>>>> (vol2.nii image in my case). >>>>> >>>>> I really appreciate any help here. >>>>> >>>>> Hari Guragain >>>>> >>>>> >>>>> >>>>> _______________________________________________ >>>>> Freesurfer mailing list >>>>> Freesurfer@nmr.mgh.harvard.edu >>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> -- >>>> Douglas N. Greve, Ph.D. >>>> MGH-NMR Center >>>> gr...@nmr.mgh.harvard.edu >>>> Phone Number: 617-724-2358 >>>> Fax: 617-726-7422 >>>> >>>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >>>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >>>> >>>> The information in this e-mail is intended only for the person to whom it >>>> is >>>> addressed. If you believe this e-mail was sent to you in error and the >>>> e-mail >>>> contains patient information, please contact the Partners Compliance >>>> HelpLine at >>>> http://www.partners.org/complianceline . If the e-mail was sent to you in >>>> error >>>> but does not contain patient information, please contact the sender and >>>> properly >>>> dispose of the e-mail. >>>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >> -- >> Douglas N. Greve, Ph.D. >> MGH-NMR Center >> gr...@nmr.mgh.harvard.edu >> Phone Number: 617-724-2358 >> Fax: 617-726-7422 >> >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
