[Freesurfer] Cortical thickness analysis using *.nii files

2013-01-16 Thread Sinead Kelly
Dear members, I am new to Freesurfer and to cortical thickness analysis so I would like to ask a very basic question that I cannot find the answer to online - is it possible to conduct cortical thickness analysis using T1 files in *.nii format? -- Sinead Kelly Neuropsychiatric Genetics Group Tri

Re: [Freesurfer] Cortical thickness analysis using *.nii files

2013-01-16 Thread Bruce Fischl
Hi Sinead, sure, just give recon-all the .nii as input with -i instead of the dicoms and you should be all set. cheers Bruce On Wed, 16 Jan 2013, Sinead Kelly wrote: > Dear members, > > I am new to Freesurfer and to cortical thickness analysis so I would > like to ask a very basic question th