[Freesurfer] deflate compression support

2008-10-24 Thread lan lin
I'm trying to make a monkey template using mris_make_template. So far, every time I run the mris_make_template, I get this error: monkey.tif: Deflate compression support is not configured. TiffWrite: TIFFWriteScanline returned error ___ Freesurfer

Re: [Freesurfer] deflate compression support

2008-10-24 Thread Nick Schmansky
Which freesurfer distribution do you have? On Fri, 2008-10-24 at 11:08 -0700, lan lin wrote: I'm trying to make a monkey template using mris_make_template. So far, every time I run the mris_make_template, I get this error: monkey.tif: Deflate compression support is not configured.

Re: [Freesurfer] deflate compression support

2008-07-09 Thread Jan Kalkus
Thank you very much, that solved my problem. However, though I can now write .tif files, freesurfer does not seem to want to read them (when using mris_register): [Macintosh-10:/Volumes/Data/monkey_surface_data] work% mris_make_template rh sphere bu_edited monk_temp0.tif creating new

Re: [Freesurfer] deflate compression support

2008-07-08 Thread Nick Schmansky
Jan, It appears that the libtiff used to build mris_make_template did not have deflate (zip) support. An updated binary can be downloaded from here: wget ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/fsdev/nicks/stable/macintel/mris_make_template the wget command is one line. run this

[Freesurfer] Deflate compression support is not configured

2008-07-07 Thread Mark A. Pinsk
Similar to a thread below, I'm having trouble running mris_make_template. First time I'm trying mris_make_template. On a Mac Pro, running 10.5.4, running FS 4.0.5, installed libtiff from darwinports mris_make_template rh sphere monk monk1.tif . monk1.tif: Deflate compression support is

[Freesurfer] deflate compression support

2008-07-01 Thread Jan Kalkus
Hi everyone, I'm trying to make a monkey template using mris_make_template. So far, every time I run the mris_make_template, I get this error: [jkalkus:~] work% /Volumes/Data/monkey_surface_data/mris_make creating new parameterization... processing subject bu_edited (1 of 1) reading

Re: [Freesurfer] deflate compression support

2008-07-01 Thread Pedro Paulo de Magalhães Oliveira Junior
Some versions of LibTiff have the zlib compression support disabled. Do you have an older version of LibTiff in your Mac? 2008/7/1 Jan Kalkus [EMAIL PROTECTED]: Hi everyone, I'm trying to make a monkey template using mris_make_template. So far, every time I run the

Re: [Freesurfer] deflate compression support

2008-07-01 Thread Pedro Paulo de Magalhães Oliveira Junior
The problem is if the libtiff was compiled with zlib or not. I think it would be nice to rebuild your libtiff from ports: http://tiff.darwinports.com/ 2008/7/1 Jan Kalkus [EMAIL PROTECTED]: I have libtiff 3.8.2. On Jul 1, 2008, at 12:06 PM, Pedro Paulo de Magalhães Oliveira Junior wrote:

Re: [Freesurfer] deflate compression support

2008-07-01 Thread Jan Kalkus
I've tried reinstalling libtiff with darwinports, but unfortunately I still get the same error. On Jul 1, 2008, at 12:20 PM, Pedro Paulo de Magalhães Oliveira Junior wrote: The problem is if the libtiff was compiled with zlib or not. I think it would be nice to rebuild your libtiff from

Re: [Freesurfer] Deflate compression support

2008-06-26 Thread Nick Schmansky
Jan Kalkus, Which version of freesurfer are you using? I think this problem appeared a couple versions ago and was fixed, so you may want to get the newest version. Nick Hi, I'm using mris_make_template to create a template with some monkey data. At the very end I get this message:

[Freesurfer] Deflate compression support

2008-06-25 Thread Jan Kalkus
Hi, I'm using mris_make_template to create a template with some monkey data. At the very end I get this message: Deflate compression support is not configured. TiffWrite: TIFFWriteScanline returned error I've recompiled libtiff with the #define COMPRESSION_SUPPORT option in the tifconf.h