Re: [Freesurfer] ERROR: Talairach failed

External Email - Use Caution It is clear now thank you. Le mer. 27 juil. 2022 à 14:13, Douglas N. Greve a écrit : > recon-all does not change the space to mni305 (it just "conforms" it). > > On 7/26/2022 10:22 AM, Bouchra Guelib wrote: > > External Email - Use Caution >

Re: [Freesurfer] ERROR: Talairach failed

recon-all does not change the space to mni305 (it just "conforms" it). On 7/26/2022 10:22 AM, Bouchra Guelib wrote: External Email - Use Caution The problem was That I transferred my MRI to mni 305 space before the recon-all. Still, when I read the documentation on your website, I fo

Re: [Freesurfer] ERROR: Talairach failed

External Email - Use Caution The problem was That I transferred my MRI to mni 305 space before the recon-all. Still, when I read the documentation on your website, I found that changing the space is a step of the recon-all, so I used recon-all directly on my original data without a

Re: [Freesurfer] ERROR: Talairach failed

did you see where it said "see http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Talairach

[Freesurfer] ERROR: Talairach failed

External Email - Use Caution I have a nifty MRI, converted to mni 305 space when I apply recon-all, I have this error: ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0.0525, pval=0.0034 < threshold=0.0050) Command exited with non-zero status 1 @

Re: [Freesurfer] ERROR: Talairach failed!

*Von:* freesurfer-boun...@nmr.mgh.harvard.edu im Auftrag von Douglas N. Greve *Gesendet:* Donnerstag, 21. April 2022 20:03:32 *An:* freesurfer@nmr.mgh.harvard.edu *Betreff:* Re: [Freesurfer] ERROR: Talairach failed! Can you provide the tkregisterfv command line

Re: [Freesurfer] ERROR: Talairach failed!

. Greve Gesendet: Donnerstag, 21. April 2022 20:03:32 An: freesurfer@nmr.mgh.harvard.edu Betreff: Re: [Freesurfer] ERROR: Talairach failed! Can you provide the tkregisterfv command line and the terminal output? On 4/21/2022 3:37 AM, Fritze, Stefan wrote: External Email - Use Caution

Re: [Freesurfer] ERROR: Talairach failed!

Can you provide the tkregisterfv command line and the terminal output? On 4/21/2022 3:37 AM, Fritze, Stefan wrote: External Email - Use Caution Hello FreeSurfer Developers, I'm attempting to computerecon-all -all -subjid XXX -qcache -3T, which works fine with most of my study partici

Re: [Freesurfer] ERROR: Talairach failed!

Hi Abby if you upload an image that fails we will take a look. If I had to guess, I would say it is because you have so much non-brain tissue (neck and even shoulders). YOu could try cropping your rawavg.mgz with the freeview tools->crop tool to elimate stuff below brainstem and see if that he

Re: [Freesurfer] ERROR: Talairach failed!

Hi Abby if you load your original nifti do the directions display properly? That is, are right/anterior/superior as shown by freeview in the correct directions anatomically? cheers Bruce On Thu, 4 Apr 2019, Abby tang wrote: External Email - Use Caution Hello FreeSurfer D

[Freesurfer] ERROR: Talairach failed!

External Email - Use Caution Hello FreeSurfer Developers, I'm attempting to recon_all my subjects which is .nii file. But I usually meet this error. talairach_afd -T 0.005 -xfm transforms/talairach.xfm ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILE