recon-all does not change the space to mni305 (it just "conforms" it).
On 7/26/2022 10:22 AM, Bouchra Guelib wrote:
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The problem was That I transferred my MRI to mni 305 space before the
recon-all. Still, when I read the documentation on your website, I
found that changing the space is a step of the recon-all, so I used
recon-all directly on my original data without any space changing.
Thank you so much for your answer.
Le lun. 25 juil. 2022 à 03:40, Douglas N. Greve
<dgr...@mgh.harvard.edu> a écrit :
did you see where it said "see *MailScanner has detected a
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http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Talairach
<http://secure-web.cisco.com/11upxJF_-cI-E4FBY17KCMERFQk_Wf_2bOtw3CCmUNLSGGVrK54gr2EM9fpqEmsCTWzXs7Ea1kbTxQ4kSg8DwV8yfE1xjTDkl-LLzn9Xox5LSosY9ER1OQNAcvutPc-I5EDdB8Z8uw2r645Hw5srMmxgOldyyzqllkGGNsDM2M8aT1rn76eT5yvnpU6sDeNDgBlh2NfiAGzPRENkH5mFVjPEhDHfsT7T6QI89p3wCpxfDMhTdj9jbi0X_6Lvc71RT1iz1OsYv_FfIIsS4Sg2lrk9kW9DqS8VPrNO92qqcsr72sgIQlqObGlYyHXxpZ1McV516rU2J7prI3GaF2LtgdA/http%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FFsTutorial%2FTalairach>"?
Try following those instructions.
On 7/22/2022 7:00 AM, Bouchra Guelib wrote:
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I have a nifty MRI, converted to mni 305 space when I apply
recon-all, I have this error:
ERROR: talairach_afd: Talairach Transform:
transforms/talairach.xfm ***FAILED*** (p=0.0525, pval=0.0034 <
threshold=0.0050)
Command exited with non-zero status 1
@#@FSTIME 2022:07:22:11:11:46 talairach_afd N 4 e 0.00 S 0.00 U
0.00 P 100% M 6628 F 0 R 266 W 0 c 0 w 1 I 0 O 0 L 2.89 2.56 1.45
@#@FSLOADPOST 2022:07:22:11:11:46 talairach_afd N 4 2.89 2.56 1.45
Manual Talairach alignment may be necessary, or
include the -notal-check flag to skip this test,
making sure the -notal-check flag follows -all
or -autorecon1 in the command string.
see
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<http://secure-web.cisco.com/11upxJF_-cI-E4FBY17KCMERFQk_Wf_2bOtw3CCmUNLSGGVrK54gr2EM9fpqEmsCTWzXs7Ea1kbTxQ4kSg8DwV8yfE1xjTDkl-LLzn9Xox5LSosY9ER1OQNAcvutPc-I5EDdB8Z8uw2r645Hw5srMmxgOldyyzqllkGGNsDM2M8aT1rn76eT5yvnpU6sDeNDgBlh2NfiAGzPRENkH5mFVjPEhDHfsT7T6QI89p3wCpxfDMhTdj9jbi0X_6Lvc71RT1iz1OsYv_FfIIsS4Sg2lrk9kW9DqS8VPrNO92qqcsr72sgIQlqObGlYyHXxpZ1McV516rU2J7prI3GaF2LtgdA/http%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FFsTutorial%2FTalairach>
ERROR: Talairach failed!
what should I do?
--
*GUELIB Bouchra: *Ph.D. student
*Lire *Laboratory
University: Constantine 2-Abdelhamid Mehri- *Algeria *
Alternative email: guelibbouc...@gmail.com**
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*Lire *Laboratory
University: Constantine 2-Abdelhamid Mehri- *Algeria *
Alternative email: guelibbouc...@gmail.com**
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