Re: [Freesurfer] ERROR: aparcstats2table

2013-01-31 Thread Douglas N Greve
Catherine, I've created new scripts (attached)that will allow you to do this. Put them into $FREESURFER_HOME/bin (but make backups of the ones there:). doug On 01/30/2013 05:43 PM, Nucleos P wrote: The options for these 3: GausCurv FoldInd CurvInd do not exist when I use the -h Thanks,

Re: [Freesurfer] ERROR: aparcstats2table

2013-01-30 Thread Nucleos P
The options for these 3: GausCurv FoldInd CurvInd do not exist when I use the -h Thanks, Catherine On 1/29/13, Douglas N Greve gr...@nmr.mgh.harvard.edu wrote: yes, use the -m or --meas flags. If you run it with -h, you will get help and examples doug On 01/29/2013 04:12 PM, Nucleos P wrote:

Re: [Freesurfer] ERROR: aparcstats2table

2013-01-29 Thread Nucleos P
Hello again! Thank you for all your help so far. Just one more question now... is there a way to specify these values to be pulled using a script: GausCurv FoldInd CurvInd ...?? Thanks, Catherine On 1/23/13, Douglas N Greve gr...@nmr.mgh.harvard.edu wrote: They must be in a single folder

Re: [Freesurfer] ERROR: aparcstats2table

2013-01-29 Thread Douglas N Greve
yes, use the -m or --meas flags. If you run it with -h, you will get help and examples doug On 01/29/2013 04:12 PM, Nucleos P wrote: Hello again! Thank you for all your help so far. Just one more question now... is there a way to specify these values to be pulled using a script: GausCurv

Re: [Freesurfer] ERROR: aparcstats2table

2013-01-23 Thread Douglas N Greve
They must be in a single folder and the $SUBJECTS_DIR env variable must be set to that folder. If you know a little unix, you can set up folders with symbolic links to subjects' true directories. doug On 01/23/2013 02:58 PM, Nucleos P wrote: Thank you for your help Doug! I was trying to

Re: [Freesurfer] ERROR: aparcstats2table

2013-01-18 Thread Douglas N Greve
does the file exist? If so, is it empty(maybe because the disk is full)? On 01/18/2013 04:58 PM, Nucleos P wrote: Hello experts: Can someone please help me understand what I am doing wrong? This is the first time I am trying this command and it will not work... COMMAND: aparcstats2table

Re: [Freesurfer] ERROR: aparcstats2table

2013-01-18 Thread Douglas N Greve
actually, looking at your cmd line more I see that you have slashes (/) in the subject names. The argument to --subjects should just be a list of name. See the help (aparcstats2table -h) for examples. doug On 01/18/2013 04:58 PM, Nucleos P wrote: Hello experts: Can someone please help me