The options for these 3: GausCurv FoldInd CurvInd do not exist when I use the -h
Thanks, Catherine On 1/29/13, Douglas N Greve <gr...@nmr.mgh.harvard.edu> wrote: > yes, use the -m or --meas flags. If you run it with -h, you will get > help and examples > doug > On 01/29/2013 04:12 PM, Nucleos P wrote: >> Hello again! >> >> Thank you for all your help so far. Just one more question now... is >> there a way to specify these values to be pulled using a script: >> >> GausCurv FoldInd CurvInd >> >> ...?? >> >> Thanks, >> Catherine >> >> >> On 1/23/13, Douglas N Greve <gr...@nmr.mgh.harvard.edu> wrote: >>> They must be in a single folder and the $SUBJECTS_DIR env variable must >>> be set to that folder. If you know a little unix, you can set up folders >>> with symbolic links to subjects' true directories. >>> >>> doug >>> >>> >>> >>> On 01/23/2013 02:58 PM, Nucleos P wrote: >>>> Thank you for your help Doug! >>>> I was trying to specify the path to get to the subjects. Do I have to >>>> have all the subjects in a folder called 'subjects'? I know the naming >>>> conventions are important. >>>> Thanks again, >>>> Catherine >>>> >>>> On Fri, Jan 18, 2013 at 6:31 PM, Douglas N Greve >>>> <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> wrote: >>>> >>>> >>>> actually, looking at your cmd line more I see that you have >>>> slashes (/) >>>> in the subject names. The argument to --subjects should just be a >>>> list >>>> of name. See the help (aparcstats2table -h) for examples. >>>> doug >>>> >>>> >>>> On 01/18/2013 04:58 PM, Nucleos P wrote: >>>> > Hello experts: >>>> > >>>> > Can someone please help me understand what I am doing wrong? >>>> This >>>> is >>>> > the first time I am trying this command and it will not work... >>>> > >>>> > COMMAND: aparcstats2table --subjects /RGS4_31p/rgs0868_raw >>>> > /RGS4_31p/rgs0871_raw /RGS4_31p/rgs0883_raw/ >>>> /RGS4_31p/rgs1194_raw144/ >>>> > /RGS4_31p/rgs1311a/ /RGS4_31p/rgs1370a/ /RGS4_31p/rgs1383a/ -t >>>> > RGS4_31p/aparc.volume.rh -m volume --hemi=rh >>>> > >>>> > PATH: >>>> [/usr/local/freesurfer/subjects/RGS4_31p/rgs0868_raw/stats]:pwd >>>> > /usr/local/freesurfer/subjects/RGS4_31p/rgs0868_raw/stats >>>> > >>>> > ERROR: SUBJECTS_DIR : /usr/local/freesurfer/subjects >>>> > Parsing the .stats files >>>> > ERROR: The stats file /RGS4_31p/rgs0868_raw/stats/rh.aparc.stats >>>> is >>>> > not found or is too small to be a valid statsfile >>>> > Use --skip flag to automatically skip bad stats files >>>> > >>>> > >>>> > Thank you, >>>> > Catherine >>>> > >>>> > >>>> > _______________________________________________ >>>> > Freesurfer mailing list >>>> > Freesurfer@nmr.mgh.harvard.edu >>>> <mailto:Freesurfer@nmr.mgh.harvard.edu> >>>> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >>>> -- >>>> Douglas N. Greve, Ph.D. >>>> MGH-NMR Center >>>> gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> >>>> Phone Number: 617-724-2358 <tel:617-724-2358> >>>> Fax: 617-726-7422 <tel:617-726-7422> >>>> >>>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>>> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> >>>> FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> >>>> Outgoing: >>>> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> <mailto:Freesurfer@nmr.mgh.harvard.edu> >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >>>> >>>> The information in this e-mail is intended only for the person to >>>> whom it is >>>> addressed. If you believe this e-mail was sent to you in error and >>>> the e-mail >>>> contains patient information, please contact the Partners >>>> Compliance HelpLine at >>>> http://www.partners.org/complianceline . If the e-mail was sent to >>>> you in error >>>> but does not contain patient information, please contact the >>>> sender and properly >>>> dispose of the e-mail. >>>> >>>> >>> -- >>> Douglas N. Greve, Ph.D. >>> MGH-NMR Center >>> gr...@nmr.mgh.harvard.edu >>> Phone Number: 617-724-2358 >>> Fax: 617-726-7422 >>> >>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>> FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >>> >>> >> > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
