I'm having this error in the recon-all
#
#@# Talairach Mon May 16 16:38:01 EDT 2011
/usr/local/freesurfer/subjects/GAGRICOLA/mri
talairach_avi --i orig.mgz --xfm transforms/talairach.auto.xfm
ERROR: mpr2mni305 failed, see transforms/talairach_avi.log
Hello Dear Sir/Madam,
Please provide your expert suggestions to resolve the above-mentioned error.
Thank you very much,
Best regards
Manoj
On Sat, Nov 18, 2017 at 11:05 AM, Manoj Kumar wrote:
> Hello Dear Sir/Madam,
>
> I am fairly new to the freesurfer and am getting an error "ERROR:
> mpr2m
PPJ,
Hi,
mri_info /space/incoming/ga_2010.nii
shows that the image is 0.5 x 0.5 x 0.5. but when viewing in freeview
or tkmedit, the brain seems 'squashed', as if there is a slice gap. do
you know the details of how this was acquired?
N.
On Mon, 2011-05-16 at 17:49 -0300, Pedro Paulo de Ma
The images are: 0.5 x 0.5 x 1.0
Can mri_convert fix it or should I edit the Nifti header?
2011/5/16 Nick Schmansky
> PPJ,
>
> Hi,
>
> mri_info /space/incoming/ga_2010.nii
>
> shows that the image is 0.5 x 0.5 x 0.5. but when viewing in freeview
> or tkmedit, the brain seems 'squashed', as if
mri_convert -iks 1 --conform ga_2010.nii 001.mgz
will create an image where the z direction is 1mm. but the orientation
will still be wrong, since it was missing from the header (or
incorrect). orient_mri can be used to rotate it, but one cannot know
whether left or right is correct.
n.
On Mo
