The images are: 0.5 x 0.5 x 1.0 Can mri_convert fix it or should I edit the Nifti header?
2011/5/16 Nick Schmansky <ni...@nmr.mgh.harvard.edu> > PPJ, > > Hi, > > mri_info /space/incoming/ga_2010.nii > > shows that the image is 0.5 x 0.5 x 0.5. but when viewing in freeview > or tkmedit, the brain seems 'squashed', as if there is a slice gap. do > you know the details of how this was acquired? > > N. > > > > On Mon, 2011-05-16 at 17:49 -0300, Pedro Paulo de Magalhães Oliveira > Junior wrote: > > I'm having this error in the recon-all > > > > > > #-------------------------------------------- > > #@# Talairach Mon May 16 16:38:01 EDT 2011 > > /usr/local/freesurfer/subjects/GAGRICOLA/mri > > > > > > talairach_avi --i orig.mgz --xfm transforms/talairach.auto.xfm > > > > > > ERROR: mpr2mni305 failed, see transforms/talairach_avi.log > > > > > > I've uploaded to the ftp at surfer.nmr.mgh.harvard.edu the > > talairach_avi.log, the orig.mgz (as ppj_orig.mgz) and the original > > nifti image as ga_2010.nii > > > > > > Any hints? > > > > > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. >
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