Hi Bruce and Emma,
I am running the latest version of Freesurfer, version 6.0. I will try manually
erasing the voxels then and try re-processing the subject.
Thank you so much for your help.
Best,
Arsenije
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From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Arsenije Subotic
Sent: Tuesday, November 28, 2017 5:29 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] Erroneous output after recon-all
d.edu
Subject: [Freesurfer] Erroneous output after recon-all: Bad segmentation and
surfaces
Dear experts,
I recently finished processing a subject for whom I had performed a skull-strip
on the brainmask.mgz volume. I decreased the watershed parameter and re-examined
the brainmask and the porti