Re: [Freesurfer] Erroneous output after recon-all: Bad segmentation and surfaces

2017-11-29 Thread Arsenije Subotic
Hi Bruce and Emma, I am running the latest version of Freesurfer, version 6.0. I will try manually erasing the voxels then and try re-processing the subject. Thank you so much for your help. Best, Arsenije ___ Freesurfer mailing list Freesurfer@nm

Re: [Freesurfer] Erroneous output after recon-all: Bad segmentation and surfaces

2017-11-29 Thread Bruce Fischl
dical Imaging From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Arsenije Subotic Sent: Tuesday, November 28, 2017 5:29 PM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Erroneous output after recon-all

Re: [Freesurfer] Erroneous output after recon-all: Bad segmentation and surfaces

2017-11-29 Thread Boyd, Emma
d.edu Subject: [Freesurfer] Erroneous output after recon-all: Bad segmentation and surfaces Dear experts, I recently finished processing a subject for whom I had performed a skull-strip on the brainmask.mgz volume. I decreased the watershed parameter and re-examined the brainmask and the porti