Re: [Freesurfer] Error in SAMSEG preprocessing

2021-05-11 Thread Stefano Cerri
ndrew Sent: 10 May 2021 19:59 To: Freesurfer support list; Stefano Cerri Subject: Re: [Freesurfer] Error in SAMSEG preprocessing If this is the last message before crashing, it sounds like it’s probably a memory issue – how much do you have available? CC’ing Stefano who might have an idea of the

Re: [Freesurfer] Error in SAMSEG preprocessing

2021-05-10 Thread Hoopes, Andrew
Cerro Leon Date: Monday, May 10, 2021 at 9:31 AM To: Freesurfer support list Subject: Re: [Freesurfer] Error in SAMSEG preprocessing External Email - Use Caution After 14th interaction the terminal wrote this message: I tensorflow/core/platform/cpu_feature_guard.cc:141] Your CPU supports

Re: [Freesurfer] Error in SAMSEG preprocessing

2021-05-10 Thread Alberto Del Cerro Leon
; > Andrew > > > > *From: *freesurfer-boun...@nmr.mgh.harvard.edu < > freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Alberto Del Cerro > Leon > *Date: *Friday, May 7, 2021 at 6:49 AM > *To: *Freesurfer support list > *Subject: *[Freesurfer] Error in SA

Re: [Freesurfer] Error in SAMSEG preprocessing

2021-05-07 Thread Hoopes, Andrew
To: Freesurfer support list Subject: [Freesurfer] Error in SAMSEG preprocessing External Email - Use Caution Hello, I am trying to use SAMSEG to segment white matter lesions, I ran the following command: run_samseg --input '/home/neuroimage/fsl/vascular/1002/U1002_3DT1.nii

[Freesurfer] Error in SAMSEG preprocessing

2021-05-07 Thread Alberto Del Cerro Leon
External Email - Use Caution Hello, I am trying to use SAMSEG to segment white matter lesions, I ran the following command: run_samseg --input '/home/neuroimage/fsl/vascular/1002/U1002_3DT1.nii' '/home/neuroimage/fsl/vascular/1002/flair_reg.nii' --pallidum-separate --lesion --lesi