Re: [Freesurfer] Error in hippocampal subfield segmentation

2017-05-22 Thread Md. Mamun Al-Amin
Hi Eugenio Here is the log file. Thanks in advance. Kind regards Mamun On Mon, May 22, 2017 at 7:05 PM, Iglesias Gonzalez, Eugenio < e.igles...@ucl.ac.uk> wrote: > Thanks! Can you please send the log files: recon-all.log and > hippocampal-subfields-T1.log, which can be found in >

Re: [Freesurfer] Error in hippocampal subfield segmentation

2017-05-22 Thread Iglesias Gonzalez, Eugenio
Thanks! Can you please send the log files: recon-all.log and hippocampal-subfields-T1.log, which can be found in $SUBJECTS_DIR/[SUBJECT_NAME]/scripts/ ? Cheers, /Eugenio Juan Eugenio Iglesias ERC Senior Research Fellow Translational Imaging Group University College London

Re: [Freesurfer] Error in hippocampal subfield segmentation

2017-05-22 Thread Md. Mamun Al-Amin
Dear Eugenio It has been working very well. It stopped working suddenly. It produce two error containing text file within 10 seconds. I tried to install fresh matlab runtime2012b. However, I have not seen any change. The error is bumped as attached. There are no output file except two errors that

Re: [Freesurfer] Error in hippocampal subfield segmentation

2017-05-22 Thread Iglesias Gonzalez, Eugenio
Thanks, Mamun. Do you bump into this error with every subject you process? Also, what’s the output before the error? Cheers, /Eugenio Juan Eugenio Iglesias ERC Senior Research Fellow Translational Imaging Group University College London http://www.jeiglesias.com http://cmictig.cs.ucl.ac.uk/ On

[Freesurfer] Error in hippocampal subfield segmentation

2017-05-19 Thread Md. Mamun Al-Amin
Hello FreeSurfer Developers, I'm attempting to compute hippocampal subfield segmentation. Unfortunatelty I found following errors. Segmentation violation detected at Sat May 20 10:45:37 2017