Dear Eugenio It has been working very well. It stopped working suddenly. It produce two error containing text file within 10 seconds. I tried to install fresh matlab runtime2012b. However, I have not seen any change. The error is bumped as attached.
There are no output file except two errors that are saved in the Users/myuserid_directory/ I would appreciate if you please help me in this regard. On Mon, May 22, 2017 at 5:39 PM, Iglesias Gonzalez, Eugenio < e.igles...@ucl.ac.uk> wrote: > Thanks, Mamun. > Do you bump into this error with every subject you process? Also, what’s > the output before the error? > Cheers, > /Eugenio > > Juan Eugenio Iglesias > ERC Senior Research Fellow > Translational Imaging Group > University College London > http://www.jeiglesias.com > http://cmictig.cs.ucl.ac.uk/ > > > On 20 May 2017, at 02:08, Md. Mamun Al-Amin <mdalaminba...@gmail.com> > wrote: > > Hello FreeSurfer Developers, > > I'm attempting to compute hippocampal subfield segmentation. Unfortunatelty I > found following errors. > > ------------------------------------------------------------------------ > Segmentation violation detected at Sat May 20 10:45:37 2017 > ------------------------------------------------------------------------ > > Configuration: > Crash Decoding : Disabled > Current Visual : None > Default Encoding: ISO-8859-1 > MATLAB Root : /Applications/freesurfer/MCRv80 > MATLAB Version : 8.0.0.783 (R2012b) > Operating System: Darwin 16.5.0 Darwin Kernel Version 16.5.0: Fri Mar 3 > 16:52:33 PST 2017; root:xnu-3789.51.2~3/RELEASE_X86_64 x86_64 > Processor ID : x86 Family 6 Model 58 Stepping 9, GenuineIntel > Window System : No active display > > Fault Count: 1 > > > Abnormal termination: > Segmentation violation > > Register State (from fault): > RAX = 0000000000000000 RBX = 0000000103310000 > RCX = 0000000000000006 RDX = 0000000103313a00 > RSP = 000000010fc39e80 RBP = 000000d0ffffffff > RSI = ffffffffffffffff RDI = 0000000000000005 > > R8 = 0000000000000000 R9 = 0000000110323852 > R10 = 0000700002d27480 R11 = 0000700002d274e0 > R12 = 0000000000000005 R13 = 000000001c004121 > R14 = 0000000000000246 R15 = 0000000110500160 > > RIP = 0000700002d27b98 RFL = 0000700002d27b60 > > CS = 000000010f91fd54 FS = 0000700002d27360 GS = 0000000000000005 > > Stack Trace (from fault): > [ 0] 0x0000000101e61e46 > /Applications/freesurfer/MCRv80/bin/maci64/libmwfl.dylib+00036422 > _ZN2fl4diag15stacktrace_base7captureERKNS0_14thread_contextEm+000150 > [ 1] 0x0000000101e62af1 > /Applications/freesurfer/MCRv80/bin/maci64/libmwfl.dylib+00039665 > fl_diag_terminate+000321 > [ 2] 0x0000000101e64c34 > /Applications/freesurfer/MCRv80/bin/maci64/libmwfl.dylib+00048180 > _ZN2fl4diag13terminate_logEPKcRKNS0_14thread_contextE+000100 > [ 3] 0x0000000105ed825e > /Applications/freesurfer/MCRv80/bin/maci64/libmwmcr.dylib+00315998 > mnTrapCtrlc+000254 > [ 4] 0x0000000105ed9d24 > /Applications/freesurfer/MCRv80/bin/maci64/libmwmcr.dylib+00322852 > _Z32mnRunPathDependentInitializationv+003492 > [ 5] 0x0000000105eda13d > /Applications/freesurfer/MCRv80/bin/maci64/libmwmcr.dylib+00323901 > _Z32mnRunPathDependentInitializationv+004541 > [ 6] 0x0000000105eda7f5 > /Applications/freesurfer/MCRv80/bin/maci64/libmwmcr.dylib+00325621 > _Z32mnRunPathDependentInitializationv+006261 > [ 7] 0x0000000105eda945 > /Applications/freesurfer/MCRv80/bin/maci64/libmwmcr.dylib+00325957 > mnFatalSignalHandler+000149 > [ 8] 0x00007fffa5b60b3a > /usr/lib/system/libsystem_platform.dylib+00011066 _sigtramp+000026 > [ 9] 0x00000004ffffffff > /usr/lib/system/libsystem_platform.dylib+18446603359210840063 > > > If this problem is reproducible, please submit a Service Request via: > http://www.mathworks.com/support/contact_us/ > > A technical support engineer might contact you with further information. > > Thank you for your help.** This crash report has been saved to disk as > /Users/mdmamunalamin/matlab_crash_dump.5756-1 ** > > > > MATLAB is exiting because of fatal error > /Applications/freesurfer/bin/run_segmentSubjectT1_autoEstimateAlveusML.sh: > line 38: 5756 Killed: 9 > "${exe_dir}"/segmentSubjectT1_autoEstimateAlveusML.app/Contents/MacOS/segmentSubjectT1_autoEstimateAlveusML > $a > > > I would like to draw your kind attention regarding this. > > > > -- > > Kind regards > > Md. Mamun Al-Amin > ------------------------------ > PhD Candidate, Queensland Brain Institute > Building 79, St Lucia QLD 4072 > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > -- Kind regards Md. Mamun Al-Amin ------------------------------ PhD Candidate, Queensland Brain Institute Building 79, St Lucia QLD 4072
matlab_crash_dump.33234-1
Description: Binary data
matlab_crash_dump.33269-1
Description: Binary data
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
