Hi Guillaume,
not sure what is going on. It could be missing permissions or it could
be that the disk is full?
You could also try to drop the --do-label and see if that works.
Best, Martin
On Fri, 2020-02-14 at 10:12 +0100, Guillaume Carey wrote:
>
> Hello everyone,
> I’m currently work
External Email - Use Caution
Hello everyone,
I’m currently working on a longitudinal FreeSurfer pipeline in order to compare
cortical thickness changes across the time. I’m using FreeSurfer version 6.0.0
(OS: Scientific Linux 7.3). I already processed the recon-all, -base and -l
Dear Freesurfer experts,
I'm running into some problems when running the long_mris_slopes command
(longitudinal 2 stage model) to get the rate of change for thickness and area
for each hemisphere.
This is the command I ran:
for i in thickness area ; do
for j in rh ; do
lon
Hi Shannon,
I have no idea why it would run and then when re-running it fails. Are
you calling it exactly the same way? Do you have write permissions in
those directories.
If it prints the command (mris_label_calc) that it is trying to run, can
you try to run only that command?
Also you can try
Hi Freesurfers,
I've just tried to use the long_mris_slopes command on some longitudinal
data. I've created my long.qdec.table.dat file. I've run this command
before without any problems but I need to re-run it again. This time when I
try to re-run it this error pops up:
ERROR 1 : mris_label_cal
