Hi Shannon, I have no idea why it would run and then when re-running it fails. Are you calling it exactly the same way? Do you have write permissions in those directories. If it prints the command (mris_label_calc) that it is trying to run, can you try to run only that command?
Also you can try the new version from here: http://martinos.org/~mreuter/long (parameters are a little different, e.g. you need to specify the subjects dir with --sd I think and some other flags have changed from out_??? to name_???, as they can also be inputs ) Best, Martin On Fri, 2012-08-31 at 09:54 -1000, Shannon Kogachi wrote: > Hi Freesurfers, > I've just tried to use the long_mris_slopes command on some > longitudinal data. I've created my long.qdec.table.dat file. I've run > this command before without any problems but I need to re-run it > again. This time when I try to re-run it this error pops up: > > ERROR 1 : mris_label_calc intersect did not work? > > Is there any way to fix this? it also tells me the following: > > cp: target 'path/subjectID/lh.long.cortex.label' is not a directory > > Please let me know if there is any way to fix this. thank you!! > > -Shannon K. > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
