Re: [Freesurfer] Error using FsPalm

2020-09-01 Thread Douglas N. Greve
You do not need to re-run recon-all. You can use v6 recon-all output with v7 mris_preproc, mri_glmfit, mri_glmfit-sim, and fspalm On 9/1/2020 11:56 AM, 정현우 wrote: External Email - Use Caution Hi Douglas, Thank you for your advice. I just wanted to make sure what I should expect

Re: [Freesurfer] Error using FsPalm

2020-09-01 Thread 정현우
External Email - Use Caution Hi Douglas, Thank you for your advice. I just wanted to make sure what I should expect before installing v7.1.1 - will v7.1.1 allow me to run commands for analyses (e.g. mri_glmfit, mri_glmfit-sim, fspalm) with the recon-all outputs from v6.0.0? Or

Re: [Freesurfer] Error using FsPalm

2020-08-20 Thread Douglas N. Greve
I think we made some changes in v7.1.1 that might fix the error. Can you try that? I suspect the underlying problem is that there are not any clusters that are surviving On 8/19/2020 11:11 AM, 정현우 wrote: External Email - Use Caution I'm using version 6.0.0. 2020년 8월 20일 (목) 오전

Re: [Freesurfer] Error using FsPalm

2020-08-19 Thread 정현우
External Email - Use Caution I'm using version 6.0.0. 2020년 8월 20일 (목) 오전 12:08, Douglas N. Greve 님이 작성: > what version of fs are you using? > > On 8/19/2020 9:03 AM, 정현우 wrote: > > External Email - Use Caution > Hi Douglas, > > Thank you for your response. I followed

Re: [Freesurfer] Error using FsPalm

2020-08-19 Thread Douglas N. Greve
what version of fs are you using? On 8/19/2020 9:03 AM, 정현우 wrote: External Email - Use Caution Hi Douglas, Thank you for your response. I followed your suggestions and additionally tried using Matlab instead of Octave for FsPalm analysis, but I still failed to get the results.

Re: [Freesurfer] Error using FsPalm

2020-08-19 Thread 정현우
External Email - Use Caution Hi Douglas, Thank you for your response. I followed your suggestions and additionally tried using Matlab instead of Octave for FsPalm analysis, but I still failed to get the results. Adding $FREESURFER_HOME/fsfast/toolbox to my matlab path removed the

Re: [Freesurfer] Error using FsPalm

2020-08-13 Thread Douglas N. Greve
On 8/12/2020 2:44 AM, 정현우 wrote: External Email - Use Caution Hello Freesurfer Developers, I'm trying to do permutation simulation on 50 subjects to find brain region clusters of which cortical thicknesses have significant association with clinical parameters while controlling for

[Freesurfer] Error using FsPalm

2020-08-12 Thread 정현우
External Email - Use Caution Hello Freesurfer Developers, I'm trying to do permutation simulation on 50 subjects to find brain region clusters of which cortical thicknesses have significant association with clinical parameters while controlling for age and sex. I tried this via