Re: [Freesurfer] Error when trying to compile the code

2017-08-14 Thread Douglas N Greve
what is your configure line? You may need to add something to point to the mni library --with-mni-dir="/usr/pubsw/packages/mni/1.5" On 08/14/2017 10:32 AM, Aziz Nanthaamornphong wrote: > Dear FreeSurfer Experts, > > I was trying to compile the FreeSurfer code by following steps shown > in > ht

[Freesurfer] Error when trying to compile the code

2017-08-14 Thread Aziz Nanthaamornphong
Dear FreeSurfer Experts, I was trying to compile the FreeSurfer code by following steps shown in https://surfer.nmr.mgh.harvard.edu/fswiki/freesurfer_mac_developers_page However, I got this error message after I ran ./configure configure: error: FATAL: netcdf lib not found. Set LDFLAGS or --wit