what is your configure line? You may need to add something to point to the mni library
--with-mni-dir="/usr/pubsw/packages/mni/1.5" On 08/14/2017 10:32 AM, Aziz Nanthaamornphong wrote: > Dear FreeSurfer Experts, > > I was trying to compile the FreeSurfer code by following steps shown > in > https://surfer.nmr.mgh.harvard.edu/fswiki/freesurfer_mac_developers_page > > However, I got this error message after I ran ./configure > > configure: error: FATAL: netcdf lib not found. Set LDFLAGS or > --with-mni-dir. > > > > I currently use OS X El Capitan as the OS. > > How can I solve this problem? Thank you in advance. > > Aziz. > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
