what is your command line?
On 3/5/2020 1:50 AM, Tien Pham wrote:
External Email - Use Caution
Thank you for your suggestion.
I tried to use freeview to load surface on the label I created. But
terminal showed this error '' freadFloat: fread failed '' many times.
I tried to load label
External Email - Use Caution
Thank you for your suggestion.
I tried to use freeview to load surface on the label I created. But
terminal showed this error '' freadFloat: fread failed '' many times.
I tried to load label with qdec and I got the error (pic 1) I attached
below.
I
Try using freeview
On 2/18/2020 8:17 PM, Tien Pham wrote:
External Email - Use Caution
Thank you for your email.
I tried to load the label with qdec and freeview and both were not worked.
When i tried with qdec, It said '' load the surface first '' then I
did but It did not work and
External Email - Use Caution
Thank you for your email.
I tried to load the label with qdec and freeview and both were not worked.
When i tried with qdec, It said '' load the surface first '' then I did but
It did not work and showed some errors.
The other way when I tried to load
What tool are you trying to use to load the label? What happens when you
try?
On 2/7/2020 10:11 PM, Tien Pham wrote:
External Email - Use Caution
Thank you for your email. I run exactly the command mri_label2label as
you suggested, and the command finished without any problem.
But
External Email - Use Caution
Thank you for your email. I run exactly the command mri_label2label as
you suggested, and the command finished without any problem.
But I did not know why I could not open the label.
Please help me. Thank you once again.
On Tue, Feb 4, 2020 at 2:55 AM
sorry for the delay. You will have to use mri_label2label to map the
label from the fsaverage space to the individual space
On 1/31/2020 10:01 PM, Tien Pham wrote:
External Email - Use Caution
Can you read my message?
I used longitudinal pipeline for my data set with two time points
External Email - Use Caution
Can you read my message?
I used longitudinal pipeline for my data set with two time points and
measured the LGI differences between them.
Then I created the label based on significant clusters which showed in QDEC.
I tried to load the label on the
External Email - Use Caution
Thank you for your response.
I used longitudinal pipeline for my data set with two time points and
calculated the LGI differences between them.
Then I created the label based on significant clusters which showed in QDEC.
I tried to load the label on
Sorry, I do not have the previous emails, can you repost with previous
emails in the message?
On 1/28/2020 7:35 PM, Tien Pham wrote:
External Email - Use Caution
Thank you for your response.
I used longitudinal pipeline for my data set with two time points and
calculated the LGI
External Email - Use Caution
Thank you for your response.
I used longitudinal pipeline for my data set with two time points and
calculated the LGI differences between them.
Then I created the label based on significant clusters which showed in QDEC.
I tried to load the label on
I cannot see anything wrong with the label. How did you create it? Are you sure
that the label belongs to the same subject's surface that you loading it onto?
On 1/26/2020 12:10 AM, Tien Pham wrote:
External Email - Use Caution
Thank you for your e-mail.
Yes, of course. I send the
I'm guessing that there is something wrong with the label. Can you send it?
On 1/21/2020 8:08 PM, Tien Pham wrote:
External Email - Use Caution
Thank you for your e-mail.
I also could not load the label in freeview. The terminal showed the following
error:
2020-01-22 09:56:18.064
External Email - Use Caution
Thank you for your e-mail.
I also could not load the label in freeview. The terminal showed the
following error:
2020-01-22 09:56:18.064 Freeview[51338:303] modalSession has been exited
prematurely - check for a reentrant call to endModalSession:
You can try freeview, but there might be something wrong with the label. How
was it created?
On 1/16/2020 11:51 PM, Tien Pham wrote:
External Email - Use Caution
Thank you for your help.
I cannot load the label on surface, this is the error:
External Email - Use Caution
Thank you for your help.
I cannot load the label on surface, this is the error:
[toyama-no-iMac:/applications/freesurfer/subjects] toyama% qdec
Reading /applications/freesurfer/tktools/tkUtils.tcl
Using
Is the label valid? Can you load it on a surface? How many points are in it?
On 1/16/2020 9:51 PM, Tien Pham wrote:
External Email - Use Caution
Thank you for your e-mail.
It seems I got another error. This is what it showed in terminal:
External Email - Use Caution
Thank you for your e-mail.
It seems I got another error. This is what it showed in terminal:
[toyama-no-iMac:/applications/freesurfer/subjects] toyama% mri_segstats --i
lh.pial_lgi --slabel VC001_1 lh lh.frontoinsula.label --id 1 --sum sum.dat
$Id:
Sorry, it should have been --sum instead of --o
the subject name is subject_id
--id 1 just means to take the vertices in the label (--id 0 would mean to take
the background)
On 1/16/2020 7:07 PM, Tien Pham wrote:
External Email - Use Caution
Thank you very much for your e-mail.
I
External Email - Use Caution
Thank you very much for your e-mail.
I tried, but this '' --o '' is unknown showing in terminal and the '' --id
'' flag is subject name?
Could you please help me?
For example, I found the change in frontoinsula region between 2 groups in
my dataset and
It might be easier to use mri_segstats, eg,
mri_segstats --i lh.pial_lgi --slabel subject_id lh lh.untitled.label --id 1
--o sum.dat
The mean value will be in the "Mean" column of the sum.dat
On 1/14/2020 7:08 PM, Tien Pham wrote:
External Email - Use Caution
Dear FreeSurfer
External Email - Use Caution
Dear FreeSurfer Experts,
I am Tien Pham, I am stucked at this situation. I calculated longitudinal
LGI changes in my data set with two time points using longitudinal
pipeline. Now I would like to extract the regional LGI and gray matter
volume in my
22 matches
Mail list logo
