Coordinates from the Destrieux
Atlas: Checking steps
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Douglas N Greve
<http://www
Hi Douglas,
Sorry about that! I hope this works. I have pasted the earlier
correspondence here with your response below:
Re: [Freesurfer] Extracting MNI Coordinates from the Destrieux Atlas:
Checking steps
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sorry, what is this in reference too? Please remember to include the
text from previous exchanges so we have context for questions. We answer
a lot of email on freesurfer@... and it is hard to keep track of things.
On 8/14/15 7:00 AM, Elijah Mak wrote:
Hi Douglas,
Thanks for the help! Howev
Hi Douglas,
Thanks for the help! However, when I tried the --nofixmni flag, all the
ROIs appeared to have identical MNI coordinates. I have pasted the output
from 3 ROIS in the LH.
# ClusterNo Max VtxMax Size(mm^2) MNIX MNIY MNIZNVtxs
13.332 83949 82219.39-29.4 -2
Those are more-or-less talairach coords, not MNI. If you add --nofixmni,
the results will be reported in mni305 coords.
On 08/10/2015 08:39 AM, Elijah Mak wrote:
> Hi Freesurfer Experts,
>
> For the purpose of defining nodes in a graph theory analysis, I would
> like to generate a list of X Y Z
Hi Freesurfer Experts,
For the purpose of defining nodes in a graph theory analysis, I would like
to generate a list of X Y Z coordinates in MNI space for all the labels in
the Destrieux atlas. I came across a previous post with the following steps:
Step 1:
mri_annotation2label --subject fsavera
