Re: [Freesurfer] FW: mri_convert changing orientation but lose last coronal slice

2021-05-31 Thread Douglas N. Greve
No, notĀ  easily. I think the field of view must be lower in that dimension and so it is cropping. On 5/28/2021 3:23 PM, Melissa Marie Rundle wrote: External Email - Use Caution Hi, I am using mri_convert to change the orientation of an image in its native space from LPSĀ  to PSR.

[Freesurfer] FW: mri_convert changing orientation but lose last coronal slice

2021-05-28 Thread Melissa Marie Rundle
External Email - Use Caution Hi, I am using mri_convert to change the orientation of an image in its native space from LPS to PSR. Ex. Mri_convert -out_orientation PSR input_file output_file Sometime when I do this, I lose the last coronal slice(s) of the occipital lobe when