No, not  easily. I think the field of view must be lower in that dimension and so it is cropping.

On 5/28/2021 3:23 PM, Melissa Marie Rundle wrote:

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Hi,

I am using mri_convert to change the orientation of an image in its native space from LPS  to PSR.

Ex. Mri_convert –out_orientation PSR input_file output_file

Sometime when I do this, I lose the last coronal slice(s) of the occipital lobe when the image is converted to PSR.  Is there some way to ensure that when I change the orientation, I get the whole brain back?

Thanks,

Melissa


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