Re: [Freesurfer] FreeSurfer questions exchange

2021-08-17 Thread Douglas N. Greve
On 8/9/2021 5:51 AM, 刘 亚飞 wrote: External Email - Use Caution Hello! In the process of learning freeSurefer, I have two questions: The first question is that I want to convert a file in .stl format to a .pial file, but the error "does not apear to be an STL file" appears when

[Freesurfer] FreeSurfer questions exchange

2021-08-09 Thread 刘 亚飞
External Email - Use Caution Hello! In the process of learning freeSurefer, I have two questions: The first question is that I want to convert a file in .stl format to a .pial file, but the error "does not apear to be an STL file" appears when using the mris_convert command,

[Freesurfer] FreeSurfer Questions

2011-10-19 Thread Christopher McCarthy
Dear FreeSurfer Gurus, We are looking for a way to normalize the intensity histogram for our subjects. In the past we have used Brain Image Java, using FSL-Fast inhomogeneity corrections. Unfortunately we are unable to open the output files (.img, .hdr) in FreeSurfer. When trying to import the

Re: [Freesurfer] FreeSurfer Questions

2011-10-19 Thread Bruce Fischl
Hi Christopher try outputing nifti from FSL instead of analyze and see if that helps. Don't go through analyze at all. cheers, Bruce On Wed, 19 Oct 2011, Christopher McCarthy wrote: Dear FreeSurfer Gurus, We are looking for a way to normalize the intensity histogram for our subjects.