Re: [Freesurfer] Freesurfer: Re-run recon-all in older versions

2021-11-12 Thread Douglas N. Greve
Oh, I think that should work, but no promises. Just re-run the v6 output in 5.3. Why are you going back to 5.3? On 11/12/2021 10:45 AM, Miguel Ángel Rivas Fernández wrote: External Email - Use Caution Hi Douglas, I would going from freesurfer 6 to freesurfer 5.3, not from FS 5.3 to

Re: [Freesurfer] Freesurfer: Re-run recon-all in older versions

2021-11-12 Thread Miguel Ángel Rivas Fernández
External Email - Use Caution I am in the same situation as Steve. Is there a particular flag to rerun subjects in freesurfer 5.3. Best regards, El vie., 12 nov. 2021 16:45, Miguel Ángel Rivas Fernández < miguelrivasf...@gmail.com> escribió: > Hi Douglas, > > I would going from

Re: [Freesurfer] Freesurfer: Re-run recon-all in older versions

2021-11-12 Thread Miguel Ángel Rivas Fernández
External Email - Use Caution Hi Douglas, I would going from freesurfer 6 to freesurfer 5.3, not from FS 5.3 to FS 6. Best, El vie., 12 nov. 2021 15:51, Douglas N. Greve escribió: > If you are going from 5.3 to 6, you should just be able to run recon-all > -all on the 5.3 fold

Re: [Freesurfer] Freesurfer: Re-run recon-all in older versions

2021-11-12 Thread Douglas N. Greve
If you are going from 5.3 to 6, you should just be able to run recon-all -all on the 5.3 folder and it should take into account your previous edits (make a copy first though:) On 11/12/2021 4:40 AM, Steve Petersen wrote: External Email - Use Caution Dear all, We conducted the recon-

[Freesurfer] Freesurfer: Re-run recon-all in older versions

2021-11-12 Thread Steve Petersen
External Email - Use Caution Dear all, We conducted the recon-all and applied a quality control protocol in several subjects using the FSurfer 6 version. Now, we would like to run the recon-all again on an older version of FSurfer (5.3 v) but considering the edits we made on those