Re: [Freesurfer] Freesurfer installation problem

2014-06-11 Thread Venkateswaran Rajagopalan
Nick, Thanks very much. I will do as per your suggestion. I am new to Linux and Ubuntu. If I am not bothering you too much. I read an article where they compared the results from Freesurfer's different versions and about using different OS and concluded saying that use the same version and do

[Freesurfer] Freesurfer installation problem

2014-06-10 Thread Venkateswaran Rajagopalan
Dear All, I looked into the archives extensively but could not find a solution to my problem. I am having Ubuntu Linux administrator-HP-Pro-3330-MT 3.13.0-24-generic #46-Ubuntu SMP Thu Apr 10 19:08:14 UTC 2014 i686 i686 i686 GNU/Linux. I tried installing

Re: [Freesurfer] Freesurfer installation problem

2014-06-10 Thread Bruce Fischl
Hi Venkat What hardware platform are you running on? And can you run: ls -l /usr/local/freesurfer/bin/mri_convert cheers Bruce On Tue, 10 Jun 2014, Venkateswaran Rajagopalan wrote: Dear All, I looked into the archives extensively but could not find a solution to my problem. I am

Re: [Freesurfer] Freesurfer installation problem

2014-06-10 Thread Nick Schmansky, MGH
Venkat, Your system appears to be 32bit distribution, as indicated by 'i686' in your output string, but the freesurfer you installed is 64b, indicated by 'x86_64' in our filename. So you will need the 32b dist: freesurfer-Linux-centos4-stable-pub-v5.3.0.tar.gz Also, v5.0.0 is pretty old, I'd

Re: [Freesurfer] Freesurfer installation problem

2014-06-10 Thread Venkateswaran Rajagopalan
Hi Bruce, Thanks very much What hardware platform are you running on? Memory: 3.8 GiB Processor Intel core i3-3220 cpu @3.30 GHz*4 Graphics Intel Ivybridge Desktop x86/MMX/SSE2 OS type 32-bit Disk 103.1 GB And can you run: ls -l /usr/local/freesurfer/bin/mri_convert I get the following when

Re: [Freesurfer] Freesurfer Installation Problem

2007-01-09 Thread Nick Schmansky
Jaakko, The message about the missing talairach.xfm file can be ignored (unless things stop completely and issue an error message). The code performs a relative path search to find the file if it doesnt find it in the hard- coded path (a historical remnant). About the Tcl problem, which Linux