one.
> Original Message
> From: Bruce Fischl
> Sent: Sunday, November 6, 2016 7:08 PM
> To: Freesurfer support list
> Reply To: Freesurfer support list
> Subject: Re: [Freesurfer] Fw: recon-all steps question
>
> Yes, I think so
> Bruce
>
>> On Nov 6, 2016, at 6:34 PM
Best,
Paul
Sent from my BlackBerry 10 smartphone.
Original Message
From: Bruce Fischl
Sent: Sunday, November 6, 2016 7:08 PM
To: Freesurfer support list
Reply To: Freesurfer support list
Subject: Re: [Freesurfer] Fw: recon-all steps question
Yes, I think so
Bruce
> On Nov 6, 2016, at 6:34
Best,
Paul
Sent from my BlackBerry 10 smartphone.
Original Message
From: Bruce Fischl
Sent: Sunday, November 6, 2016 7:08 PM
To: Freesurfer support list
Reply To: Freesurfer support list
Subject: Re: [Freesurfer] Fw: recon-all steps question
Yes, I think so
Bruce
> On Nov 6, 2016, at 6:34
es from recon-all -all ?
Best,
Paul
Sent from my BlackBerry 10 smartphone.
Original Message
From: Bruce Fischl
Sent: Sunday, November 6, 2016 7:08 PM
To: Freesurfer support list
Reply To: Freesurfer support list
Subject: Re: [Freesurfer] Fw: recon-all steps question
Yes, I think so
Bruce
, 2016 6:15 PM
> To: Freesurfer support list
> Reply To: Freesurfer support list
> Subject: Re: [Freesurfer] Fw: recon-all steps question
>
> I would run autorecon1 witth skull stripping, then replace it with your
> own stripped volume (the brainmask.mgz). It will treat that as a &q
segmentation
volume? Thank you.
Best,
Paul
Sent from my BlackBerry 10 smartphone.
Original Message
From: Bruce Fischl
Sent: Sunday, November 6, 2016 6:15 PM
To: Freesurfer support list
Reply To: Freesurfer support list
Subject: Re: [Freesurfer] Fw: recon-all steps question
I would run
>
Sent from my BlackBerry 10 smartphone.
Original Message
From: Bruce Fischl
Sent: Sunday, November 6, 2016 12:14 PM
To: Freesurfer support list
Reply To: Freesurfer support list
Subject: Re: [Freesurfer] Fw: recon-all steps question
Hi Paul
hmm, you have to be a bit careful with the -no* fl
smartphone.
Original Message
From: Bruce Fischl
Sent: Sunday, November 6, 2016 12:14 PM
To: Freesurfer support list
Reply To: Freesurfer support list
Subject: Re: [Freesurfer] Fw: recon-all steps question
Hi Paul
hmm, you have to be a bit careful with the -no* flags as you want to avoid
ort list
Subject: Re: [Freesurfer] Fw: recon-all steps question
Hi Paul
can we take a step back. What are you trying to achieve by avoiding these
steps?
cheers
Bruce
On Fri, 4 Nov 2016, miracoo...@gmail.com wrote:
Thanks Bruce. Another question, since " -no segmentation " flag skips
pial and white matter edits.
Best,
Paul
Sent from my BlackBerry 10 smartphone.
Original Message
From: Bruce Fischl
Sent: Friday, November 4, 2016 3:37 PM
To: Freesurfer support list
Reply To: Freesurfer support list
Subject: Re: [Freesurfer] Fw: recon-all steps question
Hi Paul
can we t
eesurfer support list
Subject: Re: [Freesurfer] Fw: recon-all steps question
Hi Paul
we required the T1.mgz, brainmask.auto.mgz and brainmask.mgz volumes so
must create them somehow. I think if you copy/convert your already-stripped
and name it brainmask.mgz we should treat that as if you had edited
ry 10 smartphone.
Original Message
From: Bruce Fischl
Sent: Friday, November 4, 2016 10:50 AM
To: Freesurfer support list
Reply To: Freesurfer support list
Subject: Re: [Freesurfer] Fw: recon-all steps question
Hi Paul
we required the T1.mgz, brainmask.auto.mgz and brainmask.mgz volumes so
mus
Hi Paul
we required the T1.mgz, brainmask.auto.mgz and brainmask.mgz volumes so
must create them somehow. I think if you copy/convert your already-stripped
and name it brainmask.mgz we should treat that as if you had edited our
skull stripping and you should be able to run from their forward
Please can someone answer this. Thanks " Hello Freesurfer, I have couple of ques
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