urfer-boun...@nmr.mgh.harvard.edu] on behalf of Marissa Pifer
[marissapi...@gmail.com]
Sent: Monday, November 14, 2016 1:44 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] Getting combined bvals/bvecs
Hi Anatasia,
Thank you for your reply, I'm sorry for responding so later, I have b
Hi Anatasia,
Thank you for your reply, I'm sorry for responding so later, I have been
trying a few different things in order to get tracula to work. I did what
you suggested and compiled the bvals and bvecs into one file, in the same
order as the images. This got me further, but the trac-all -prep
Hi Marissa - You have to specify as many b-values and gradient vectors as
there are volumes in your DWI data file. This means that, if you combine
the AP and PA volumes, you also have to concatenate the bvals from the two
into one file, and do the same with the bvecs. Make sure that the order
Hello freesurfer experts,
I am trying to run tracula on subjects that have separate AP/PA direction
DTI files. We combined the data into one using topup, and would now like to
run tracula on the subject. The problem is, the combined file doesn't have
a bvals/bvecs file. When I try to use the origi
