Re: [Freesurfer] HCPMMP1 parcellation to aseg (.mgz)

2020-05-07 Thread Douglas N. Greve
esurfer support list *Date: *Thursday, May 7, 2020 at 12:21 PM *To: *"freesurfer@nmr.mgh.harvard.edu" *Subject: *Re: [Freesurfer] HCPMMP1 parcellation to aseg (.mgz) ** External Email - Caution ** If you have the annot files in your individual subject's space, then you can create

Re: [Freesurfer] HCPMMP1 parcellation to aseg (.mgz)

2020-05-07 Thread Glasser, Matthew
t;Can someone help me with this? >>Thank you From: "Glasser, Matthew" mailto:glass...@wustl.edu>> Subject: Re: [Freesurfer] HCPMMP1 parcellation to aseg (.mgz) To: Freesurfer support list mailto:freesurfer@nmr.mgh.harvard.edu>> Cc: Timothy Coalson mailto:tsc...@

Re: [Freesurfer] HCPMMP1 parcellation to aseg (.mgz)

2020-05-07 Thread Douglas N. Greve
Matthew" mailto:glass...@wustl.edu>> Subject: Re: [Freesurfer] HCPMMP1 parcellation to aseg (.mgz) To: Freesurfer support list <mailto:freesurfer@nmr.mgh.harvard.edu>> Cc: Timothy Coalson mailto:tsc...@mst.edu>> Message-ID: <29142489-f691-4e6e-a069-f7377d9c7...@wustl.edu

Re: [Freesurfer] HCPMMP1 parcellation to aseg (.mgz)

2020-05-07 Thread pooja prabhu
eg and get aparc+aseg.mgz. >>Similarly I need for HCPMMP1. >>Can someone help me with this? >>Thank you From: "Glasser, Matthew" Subject: Re: [Freesurfer] HCPMMP1 parcellation to aseg (.mgz) To: Freesurfer support list Cc: Timothy Coalson Message-ID: <29142489-f

Re: [Freesurfer] HCPMMP1 parcellation to aseg (.mgz)

2020-05-07 Thread Douglas N. Greve
sorry, can you include the previous emails? On 5/7/2020 11:25 AM, pooja prabhu wrote: External Email - Use Caution HCPMMP1 parcellation is multi modal parcellation https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4990127/ We need the file something like we have for 'aparc' parcellation. T

Re: [Freesurfer] HCPMMP1 parcellation to aseg (.mgz)

2020-05-07 Thread pooja prabhu
External Email - Use Caution HCPMMP1 parcellation is multi modal parcellation https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4990127/ We need the file something like we have for 'aparc' parcellation. The file format should be in .mgz (aparc.HCPMMP1+aseg.mgz) How can i do it? (i have

Re: [Freesurfer] HCPMMP1 parcellation to aseg (.mgz)

2020-05-07 Thread Glasser, Matthew
Reply-To: Freesurfer support list Date: Thursday, May 7, 2020 at 9:59 AM To: "freesurfer@nmr.mgh.harvard.edu" Subject: Re: [Freesurfer] HCPMMP1 parcellation to aseg (.mgz) * External Email - Caution * what's hcpmmp1? On 5/7/2020 4:46 AM, pooja prabhu wrote: External Email -

Re: [Freesurfer] HCPMMP1 parcellation to aseg (.mgz)

2020-05-07 Thread Douglas N. Greve
what's hcpmmp1? On 5/7/2020 4:46 AM, pooja prabhu wrote: External Email - Use Caution Hai list, Can I get some insight on how to convert HCPMMP1 to aseg(provided we have annotation files) for fsaverage brain?  For example: for aparc parcellation we use aparc2aseg and get aparc+aseg.m

[Freesurfer] HCPMMP1 parcellation to aseg (.mgz)

2020-05-07 Thread pooja prabhu
External Email - Use Caution Hai list, Can I get some insight on how to convert HCPMMP1 to aseg(provided we have annotation files) for fsaverage brain? For example: for aparc parcellation we use aparc2aseg and get aparc+aseg.mgz. Similarly I need for HCPMMP1. Can someone help me w