It looks like mris_convert will do, but I've never tried it.
On 5/7/2020 1:23 PM, Glasser, Matthew wrote:
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Hi Doug,
Is there a way to convert from GIFTI label to annot?
Matt.
*From: *<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of "Douglas
N. Greve" <dgr...@mgh.harvard.edu>
*Reply-To: *Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
*Date: *Thursday, May 7, 2020 at 12:21 PM
*To: *"freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu>
*Subject: *Re: [Freesurfer] HCPMMP1 parcellation to aseg (.mgz)
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If you have the annot files in your individual subject's space, then
you can create a volume in the same way that aparc+aseg.mgz is
created. In v6 and before, run mri_aparc2aseg. In v7, run
mri_surf2volseg. Look in recon-all.log to see how it was run to
craeate aparc+aseg.mgz and change the command line to indicate a
different annot and a different output
On 5/7/2020 12:17 PM, pooja prabhu wrote:
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>HCPMMP1 parcellation is multi modal parcellation
>We need the file something like we have for 'aparc' parcellation.
>The file format should be in .mgz (aparc.HCPMMP1+aseg.mgz)
>How can i do it? (i have lh.HCPMMP1.annot and rh.HCPMMP1.annot)
Date: Thu, May 7, 2020 at 2:16 PM
Subject: HCPMMP1 parcellation to aseg (.mgz)
To: <freesurfer@nmr.mgh.harvard.edu
<mailto:freesurfer@nmr.mgh.harvard.edu>>
Hai list,
>>Can I get some insight on how to convert HCPMMP1 to aseg(provided
we have annotation files) for fsaverage brain?
>>For example: for aparc parcellation we use aparc2aseg and get
aparc+aseg.mgz.
>>Similarly I need for HCPMMP1.
>>Can someone help me with this?
>>Thank you
From: "Glasser, Matthew" <glass...@wustl.edu
<mailto:glass...@wustl.edu>>
Subject: Re: [Freesurfer] HCPMMP1 parcellation to aseg (.mgz)
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu
<mailto:freesurfer@nmr.mgh.harvard.edu>>
Cc: Timothy Coalson <tsc...@mst.edu <mailto:tsc...@mst.edu>>
Message-ID: <29142489-f691-4e6e-a069-f7377d9c7...@wustl.edu
<mailto:29142489-f691-4e6e-a069-f7377d9c7...@wustl.edu>>
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That is our multi-modal parcellation. Tim has some instructions
to get data from the fs_LR mesh to fsaverage in GIFTI format.
Doug perhaps you can say how to convert from GIFTI to annot?
Matt.
--
Thank You
Pooja Prabhu
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