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Hello,
I've run into an issue with the longitudinal hippocampus/amygdala
segmentation (segmentHA_T1_long.sh). All of the commands ran properly and I
got the outputs listed on the FreeSurfer wiki but, upon QAing the
segmentations, I realized that a few
Dear Franchesca,
Could you please attach some images illustrating the problem?
Cheers,
/Eugenio
Juan Eugenio Iglesias
Senior research fellow
CMIC (UCL), MGH (HMS) and CSAIL (MIT)
http://www.jeiglesias.com
On Jul 9, 2021, at 13:06, Franchesca Kuhney
mailto:fkuh...@uic.edu>> wrote:
Exter
Wow that is indeed terrible. Do you think you could send us the same sagittal
slice for aseg.mgz, please?
Cheers,
/Eugenio
Juan Eugenio Iglesias
Senior research fellow
CMIC (UCL), MGH (HMS) and CSAIL (MIT)
http://www.jeiglesias.com
On Jul 13, 2021, at 22:31, Franchesca Kuhney
mailto:fkuh...@uic
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I hope this is helpful, thank you!
*Franchesca Kuhney, M.A.* *(she/her)*
Clinical Psychology Doctoral Student
University of Illinois at Chicago
Behavioral Sciences Building | Rm 3019
1007 W. Harrison St. | Chicago, IL 60607
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*Electronic Mail is n
Definitely an ASEG problem that the subfield routine couldn’t recover from.
Bruce: any ideas on what may have gone wrong?
Cheers,
/E
Juan Eugenio Iglesias
Senior research fellow
CMIC (UCL), MGH (HMS) and CSAIL (MIT)
http://www.jeiglesias.com
On Jul 17, 2021, at 23:46, Franchesca Kuhney
mailto:fk
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Hi Juan and Bruce,
I wanted to follow up on my previous email. Do you have any recommendations
to manually or automatically fix poor segmentations?
Thank you,
Franchesca
*Franchesca Kuhney, M.A.* *(she/her)*
Clinical Psychology Doctoral Student
Unive
: [Freesurfer] Hippocampal Subfield Definition Errors
External Email - Use Caution
Hi Juan and Bruce,
I wanted to follow up on my previous email. Do you have any recommendations to
manually or automatically fix poor segmentations?
Thank you,
Franchesca
Franchesca Kuhney, M.A. (she/her
