External Email - Use Caution
Okay.
I tried the following file. HCA8133362_V1_MR.zip
ftp> put HCA8133362_V1_MR.zip
200 PORT command successful. Consider using PASV.
425 Failed to establish connection.
ftp>
ftp> put HCA8133362_V1_MR.zip
200 PORT command successful. Consider
Please compress the whole subject directory and upload it to the ftp
https://surfer.nmr.mgh.harvard.edu/fswiki/FtpFileExchange
Cheers,
/E
Juan Eugenio Iglesias
Senior research fellow
CMIC (UCL), MGH (HMS) and CSAIL (MIT)
http://www.jeiglesias.com
On May 28, 2021, at 15:35, Daniel Davidson Callow
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Sure, what is the best way to share it with you? and which folders/files
should I send?
On Fri, May 28, 2021 at 3:28 PM Iglesias Gonzalez, Juan E. <
jiglesiasgonza...@mgh.harvard.edu> wrote:
> It seems the linear registration is dying. Would you mind
It seems the linear registration is dying. Would you mind sharing the subject,
please?
Cheers,
/E
Juan Eugenio Iglesias
Senior research fellow
CMIC (UCL), MGH (HMS) and CSAIL (MIT)
http://www.jeiglesias.com
On May 28, 2021, at 12:20, Daniel Davidson Callow
mailto:dcal...@umd.edu>> wrote:
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Hello Juan,
I am using data from the HCP aging dataset which has a T1 and a
high-resolution hippocampal scan (T2).
Yes, it does seem that the T2 and T1's are roughly aligned to each other.
It seems like it has something to do with the creation of the
Dear Daniel,
Are the T2s and T1s roughly aligned in RAS (physical coordinates)? In other
words: do they (roughly) overlap when you open them together in Freeview?
Cheers,
/E
Juan Eugenio Iglesias
Senior research fellow
CMIC (UCL), MGH (HMS) and CSAIL (MIT)
http://www.jeiglesias.com
On May
External Email - Use Caution
Hello,
I am running into errors when running
segmentHA_T2.sh ${subj}
/data/bswift-1/dcallow/aging/freesurfer/${subj}/mri/T2.norm.mgz T2 1
Approximately 10% of my subjects are being processed but for some reason,
the majority fail to execute. Here is
" <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Hippocampal Subfield Error
Dear Eugenio,
Attached as requested.
Thanks
Theo
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo
oun...@nmr.mgh.harvard.edu> on behalf of "AKUDJEDU,
THEOPHILUS" <t.akudje...@nuigalway.ie>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Tuesday, 27 February 2018 at 11:13
To: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu>
nmr.mgh.harvard.edu>
Subject: [Freesurfer] Hippocampal Subfield Error
Hi All,
I tried to run a subject through FreeSurfer 6.0 for hippocampal Subfield
segmentation but exited with errors.
The content of the recon-all.error file is below.
SUBJECT CHRM2001
DATE Sun Feb 25 00:34:13 GMT 2018
USER
Hi All,
I tried to run a subject through FreeSurfer 6.0 for hippocampal Subfield
segmentation but exited with errors.
The content of the recon-all.error file is below.
SUBJECT CHRM2001
DATE Sun Feb 25 00:34:13 GMT 2018
USER 15233963
HOST psych-sl03
PROCESSOR x86_64
OS Linux
Linux
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