Re: [Freesurfer] Hippocampal segmentation flips on the left side

Hi Lauri, This error is occurring because the libstdc++.so.6 library included with the linked matlab is older than the version shipped with centos7. While I think about the best way to resolve this, setting the following environment variable before running recon-all should clear everything up

Re: [Freesurfer] Hippocampal segmentation flips on the left side

I think this is related to a matlab incompatibility. Can I see a copy of the log? Andrew > On Jan 11, 2018, at 12:09 PM, Iglesias Gonzalez, Eugenio > wrote: > > Dear Lauri, > Your problem is that GLIBCXX_3.4.15 was not found by kvlApplyTransform, so > the left model

Re: [Freesurfer] Hippocampal segmentation flips on the left side

Dear Lauri, Your problem is that GLIBCXX_3.4.15 was not found by kvlApplyTransform, so the left model was not successfully flipped to create the right model – which is why your right hippocampus appears flipped. Andrew: any ideas on how to fix this? Cheers, /Eugenio PS: the dev version does not

Re: [Freesurfer] Hippocampal segmentation flips on the left side

Dear Lauri, Would you mind sending me the log of the subfield segmentation? Cheers, /Eugenio -- Juan Eugenio Iglesias ERC Senior Research Fellow Translational Imaging Group University College London http://www.jeiglesias.com http://cmictig.cs.ucl.ac.uk/ On 08/01/2018, 22:04,

[Freesurfer] Hippocampal segmentation flips on the left side

Dear Freesurfers, When I run freesurfer 6.0 recon-all -hippocampal-subfields-T1 command to segment an MNI152 template, the resulting segmentation of left hippocampus got flipped in left-right dimension. Otherwise the right hippocampus and other subcortical segmentations in the aseg-file look

Re: [Freesurfer] Hippocampal segmentation flips on the left side

Very weird! Can you please send us the log files? Cheers, /Eugenio -- Juan Eugenio Iglesias ERC Senior Research Fellow Translational Imaging Group University College London http://www.jeiglesias.com http://cmictig.cs.ucl.ac.uk/ On 21/12/2017, 17:51, "freesurfer-boun...@nmr.mgh.harvard.edu on