Re: [Freesurfer] How to Display Specific Cortical Parcels (not the output of the recon-all) on Brain Surface

2019-04-24 Thread Greve, Douglas N.,Ph.D.
You will have to go through a few steps. 1. Sample your labels onto the surface with mri_vol2surf --mov yoursegmentation.mgz --regheader --s subject --hemi lh --interp nearest --o lh.mysegmentation.mgz 2. Convert the surface-sampled segmentation to an annotation using mris_seg2annot. Run it with

[Freesurfer] How to Display Specific Cortical Parcels (not the output of the recon-all) on Brain Surface

2019-04-24 Thread Mahshid Fouladivanda
External Email - Use Caution Dear Freesurfer Experts, I have a predetermined cortical parcels in native space. I want to display them on brain surface, As shown in the last image of page bellow: https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/OutputData_freeview I have loa