Got it.
Thanks for the prompt answer!
By the way, I tried mri_segstats with --accumulate flag, but it says option
'--accumulate' is unknown.
I don't seem to find it when I looked up mri_segstas --help either.
On Tue, Jun 11, 2013 at 5:05 PM, Douglas N Greve
wrote:
>
> Right, so in this case, th
Hi Doug --
I copied and pasted the summary file below.
It looks like mask.mgh was treated as volumetric image.
Also I'm not sure how to interpret TableCol.
# Title Segmentation Statistics
#
# generating_program mri_segstats
# cvs_version $Id: mri_segstats.c,v 1.75.2.2 2011/04/27 22:18:58 nicks E
mri_segstats --seg mask.mgh --id 1 --i
/fMRI/2D/freesurfer/fsaverage_sym/surf/lh.area --sum sum.dat
On Tue, Jun 11, 2013 at 10:41 AM, Douglas Greve
wrote:
> what is your full command line?
>
>
> On 6/11/13 10:04 AM, Glen Lee wrote:
>
> thanks Doug.
> it worked and I got the following result on
what is your full command line?
On 6/11/13 10:04 AM, Glen Lee wrote:
thanks Doug.
it worked and I got the following result on which I have clarifying
questions:
--
Voxel Volume is 1 mm^3
Generating list of segmentation ids
Found 1 segmentations
Computing statistics for each segm
thanks Doug.
it worked and I got the following result on which I have clarifying
questions:
--
Voxel Volume is 1 mm^3
Generating list of segmentation ids
Found 1 segmentations
Computing statistics for each segmentation
0 1 81837 81837
1) I'm assuming that v
It's --sum for this, not --o
doug
On 6/10/13 4:44 PM, Glen Lee wrote:
Thanks Doug!
I just tried, but I got an error:
mri_segstats --seg mask.mgh --id 1 --i
/fMRI/2D/freesurfer/fsaverage_sym/surf/lh.area --o sum.dat
ERROR: Option --o unknown
I don't see --o option when I looked up mri_segstat
Thanks Doug!
I just tried, but I got an error:
mri_segstats --seg mask.mgh --id 1 --i
/fMRI/2D/freesurfer/fsaverage_sym/surf/lh.area --o sum.dat
ERROR: Option --o unknown
I don't see --o option when I looked up mri_segstats --help either. FYI,
I'm using v5.1.
Any idea?
On Mon, Jun 10, 2013 at
Hi Glen, you can use
mri_segstats --seg mask.mgh --id 1 --i
$SUBJECTS_DIR/fsaverage_sym/surf/lh.area --o sum.dat
doug
On 06/10/2013 03:17 PM, Glen Lee wrote:
> Dear freesurfer users
>
> I'm wondering if there is any way of figuring out the surface size
> within a mask image (mask.mgh)
> whic
Dear freesurfer users
I'm wondering if there is any way of figuring out the surface size within a
mask image (mask.mgh)
which is generated after running a group-level GLM analysis (2nd RFX) using
mri_glmfit.
As I'm thinking, this may be:
number of vertex by dimension of one vertex (1mm).
But I
