Thanks Doug! I just tried, but I got an error: mri_segstats --seg mask.mgh --id 1 --i /fMRI/2D/freesurfer/fsaverage_sym/surf/lh.area --o sum.dat ERROR: Option --o unknown
I don't see --o option when I looked up mri_segstats --help either. FYI, I'm using v5.1. Any idea? On Mon, Jun 10, 2013 at 3:39 PM, Douglas N Greve <gr...@nmr.mgh.harvard.edu>wrote: > > Hi Glen, you can use > > mri_segstats --seg mask.mgh --id 1 --i > $SUBJECTS_DIR/fsaverage_sym/surf/lh.area --o sum.dat > > doug > > > On 06/10/2013 03:17 PM, Glen Lee wrote: > > Dear freesurfer users > > > > I'm wondering if there is any way of figuring out the surface size > > within a mask image (mask.mgh) > > which is generated after running a group-level GLM analysis (2nd RFX) > > using mri_glmfit. > > > > As I'm thinking, this may be: > > number of vertex by dimension of one vertex (1mm). > > > > But I could be wrong and let me know if anyone knows the solution. > > > > -Glen > > > > fyi) the group analysis was performed in freesurfer sym space. > > > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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