Re: [Freesurfer] Is it possible to "fill in" the region delimited by an ROI label?

2020-04-01 Thread Mohammad Rashid
External Email - Use Caution Hello Dr. Greve, That was exactly what I needed, thank you very much for the help! Thank you, Mohammad From: Mohammad Rashid <17m...@queensu.ca> Sent: Friday, March 20, 2020 11:08 PM To: freesurfer@nmr.mgh.harvard.edu

Re: [Freesurfer] Is it possible to "fill in" the region delimited by an ROI label?

2020-03-26 Thread Douglas N. Greve
Sorry, I missed that you were in the volume. Try using mri_label2vol, something like mri_label2vol   --label lh.entorhinal.label   --temp orig.mgz   --identity   --fillthresh .01   --subject subjectname   --fill-ribbon   --o lh.ento.mgz On 3/20/2020 11:08 PM, Mohammad Rashid wrote: E

Re: [Freesurfer] Is it possible to "fill in" the region delimited by an ROI label?

2020-03-20 Thread Mohammad Rashid
External Email - Use Caution Hello Dr. Greve, Thank you for the response. I have extensively searched through the options available to me in freeview, but I could not find any sort of checkbox that turns off outline mode. Here is what I see, having selected the label file: http

Re: [Freesurfer] Is it possible to "fill in" the region delimited by an ROI label?

2020-03-20 Thread Douglas N. Greve
There should be a check box in the label config area to turn off outline mode On 3/19/2020 1:11 PM, Mohammad Rashid wrote: External Email - Use Caution Hi all, I'm able to load in a yellow outline for the entorhinal region by loading a file named ?h.entorhinal_exvivo.label as a volu

[Freesurfer] Is it possible to "fill in" the region delimited by an ROI label?

2020-03-19 Thread Mohammad Rashid
External Email - Use Caution Hi all, I'm able to load in a yellow outline for the entorhinal region by loading a file named ?h.entorhinal_exvivo.label as a volume. (I first load in a brain image such as brain.mgz, and then display the outline on top of it.) Is it possible to ge