We are getting an error with recon-all at the stage of Talairach slignment. The
error is the one described on the known issues: Can't locate shellwords.pl in
@INC. We are running perl5.18, so I downloaded and installed perl5.12 and
changed the first line of mritotal as indicated on the
I was hoping someone could help with this issue...
Michael Amlung, Ph.D.
Assistant Professor
Department of Psychiatry and Behavioural Neurosciences
DeGroote School of Medicine
McMaster University
Peter Boris Centre for Addictions Research
100
Hi Michael
have you visualize the Talairach alignment to see if it indeed incorrect?
Also, can you verify that the direction cosines from your data are properly
read? That is, when you view the orig.mgz in freeview does what it thinks
is inferior/superior etc... correspond to the true
