Re: [Freesurfer] Issue with tkregister command

2020-11-02 Thread Douglas N. Greve
Please remember to post to the list ... Can you run it with --debug as the first option, then post all of the terminal output? On 10/28/2020 11:21 PM, Elisabetta Ambron wrote: External Email - Use Caution Dear Prof Greve I am  having an issue running reg-feat2anat and I get the follo

Re: [Freesurfer] Issue with tkregister command

2020-04-14 Thread Tiffany Bell
.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu> mailto:freesurfer@nmr.mgh.harvard.edu>> Subject: Re: [Freesurfer] Issue with tkregister command Hmm, not sure. It could be the version of flirt that we are distributing. Can you try the command below using flirt instead of flirt.fsl ? /storage/g

Re: [Freesurfer] Issue with tkregister command

2020-04-02 Thread Tiffany Bell
'NEWMAT::SingularException' Aborted Thanks! From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Douglas N. Greve Sent: April 2, 2020 3:01 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Issue with tkregister command Hmm, no

Re: [Freesurfer] Issue with tkregister command

2020-04-02 Thread Douglas N. Greve
ehalf of Douglas N. Greve *Sent:* March 31, 2020 10:12 AM *To:* freesurfer@nmr.mgh.harvard.edu *Subject:* Re: [Freesurfer] Issue with tkregister command I think this is a bug. Can you try this version? https://gate.nmr.mgh.harvard.edu/safelinks/greve/reg-feat2anat copy it to $FREESURFER_H

Re: [Freesurfer] Issue with tkregister command

2020-04-02 Thread Tiffany Bell
From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Douglas N. Greve Sent: March 31, 2020 10:12 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Issue with tkregister command I think this is a bug. Can you try this version? https://gate.nmr.mgh.harvard.edu/safelinks

Re: [Freesurfer] Issue with tkregister command

2020-03-31 Thread Douglas N. Greve
I think this is a bug. Can you try this version? https://gate.nmr.mgh.harvard.edu/safelinks/greve/reg-feat2anat copy it to $FREESURFER_HOME/bin and run chmod a+x $FREESURFER_HOME/bin/reg-feat2anat On 3/31/2020 11:46 AM, Tiffany Bell wrote: External Email - Use Caution Hello I am tr

[Freesurfer] Issue with tkregister command

2020-03-31 Thread Tiffany Bell
External Email - Use Caution Hello I am trying to transform a free surfer segmentation to functional space using reg-feat2anat but I get the error tkregister2_cmdl_cmdl: Command not found. I am running freesufer on linux through a virtual machine. See below for the full comma