[Freesurfer] LGI qdec analysis on longitiudinal data

2014-05-19 Thread Jon Wieser
Hi freesurfer experts I am trying to analyze the longitudinal effects on LGI. I've run all my subject's through the longitudinal processing stream. I set-up my qdec dat file: fsidfsid-base years 100674-0107 100674_base 1.6 100674-0408 100674_base 2.8

Re: [Freesurfer] LGI qdec analysis on longitiudinal data

2014-05-19 Thread Martin Reuter
Hi Jon, The commands look OK. The files lh.pial_lgi.fwhm10.fsaverage.mgz are the individual smoothed lgi files (one for each time point) and should not be in the base, only in the .long. directories, so everything is OK. When running qdec, you can analyze the change or the average of this