Re: [Freesurfer] LGI without Matlab license?

2018-09-06 Thread Douglas N. Greve
I have not tried to compile it, sorry. On 09/06/2018 03:45 PM, Thomas, Adam (NIH/NIMH) [E] wrote: > > External Email - Use Caution > > We’d like to calculate the Local Gyrification Index (LGI) on several > thousand scans, but our HPC cluster does not have the necessary Matlab > licenses

Re: [Freesurfer] LGI without Matlab license?

2018-09-06 Thread Dicamillo, Robert
The Mathworks offers runtime distribution that contains the libraries you can build your code against w/o needing a Matlab license; you just cannot re-distirbute the files from the distribution w/o permission from The Mathworks. I’ve used it to build code that links against libmat etc. You

[Freesurfer] LGI without Matlab license?

2018-09-06 Thread Thomas, Adam (NIH/NIMH) [E]
External Email - Use Caution We’d like to calculate the Local Gyrification Index (LGI) on several thousand scans, but our HPC cluster does not have the necessary Matlab licenses to do this in a reasonable amount of time. Has anyone managed to compile the LGI code such that it

Re: [Freesurfer] LGI error/Matlab/ a qestion for Douglas Greve

2017-02-15 Thread Douglas N Greve
I think the ismac.m script was introduced in later versions of matlab. You can just create your own with the following content: function y=ismac y=0; return On 02/15/2017 01:59 PM, aral ahmadi wrote: > From: Douglas N Greve > So ismac.m is not defined in your matlab implementation? What

Re: [Freesurfer] LGI and MATLAB

2016-09-20 Thread Alan Francis
Thanks Bruce. On Fri, Sep 16, 2016 at 2:02 PM, Bruce Fischl wrote: > Hi Alan > > make sure matlab is in your path. You can check by typing: > > > which matlab > > > cheers > Bruce > > On Fri, 16 Sep 2016, Alan Francis wrote: > > Hi Marie - >> >> I have MATLAB and the

Re: [Freesurfer] LGI and MATLAB

2016-09-16 Thread Bruce Fischl
Hi Alan make sure matlab is in your path. You can check by typing: which matlab cheers Bruce On Fri, 16 Sep 2016, Alan Francis wrote: Hi Marie - I have MATLAB and the Image processing toolbox on my MAC. Unfortunately, I am unable to get FreeSurfer to recognize this (see below) , so I am

[Freesurfer] LGI and MATLAB

2016-09-16 Thread Alan Francis
Hi Marie - I have MATLAB and the Image processing toolbox on my MAC. Unfortunately, I am unable to get FreeSurfer to recognize this (see below) , so I am getting an error. Is there any way to overcome this? Thanks, Alan afrancis-mac:~ afrancis$ export FREESURFER_HOME=/Applications/freesurfer