Re: [Freesurfer] Label sizes, min ROI size

2009-09-16 Thread Douglas N Greve
You probably need a newer version then. Or you can get the size of the ROI from each subject's label (mris_anatomical_stats). That way is probably better anyway. doug Agnieszka Burzynska wrote: > Dear Doug, > Thank you for your reply! > The command results in ERROR: Option --slabel unknown. I c

Re: [Freesurfer] Label sizes, min ROI size

2009-09-16 Thread Agnieszka Burzynska
Dear Doug, Thank you for your reply! The command results in ERROR: Option --slabel unknown. I could not figure it out from the options descriptions with other option i could use, so i need some help again... Cheers & thank you! Aga On 9/14/09 7:48 PM, "Douglas N Greve" wrote: > > Try somethi

Re: [Freesurfer] Label sizes, min ROI size

2009-09-14 Thread Douglas N Greve
Try something like this mri_segstats --slabel fsaverage lh path/to/lh.yourlabel.label --sum lh.yourlabel.sum The 4th column of the summary file will have the Area in mm^2 doug Agnieszka Burzynska wrote: > Dear experts, > I have 2 questions: > > 1) I created labels for some ROIs on fsavgerage

[Freesurfer] Label sizes, min ROI size

2009-09-14 Thread Agnieszka Burzynska
Dear experts, I have 2 questions: 1) I created labels for some ROIs on fsavgerage (qdec analysis). I got statistics from these rois for each individual subject (by map-to-subjects, etc.), but what I am now interested in is to know the size of the ROI on the group level (so on the fsaverage surface