[Freesurfer] Longitudinal processing: QA

2021-04-19 Thread Malo Gaubert
External Email - Use Caution Hello FreeSurfer developers, I am trying to apply longitudinal processing on T1w MRI data for two timepoints (~8 months between the two TP) in adolescents in order to perform vertex-based analyses. I am following the online tutorial here for the prepro

[Freesurfer] longitudinal processing QA, and problem with aparc+aseg

2009-09-10 Thread muet0005
Hello, I am running the longitudinal processing using version 4.5 and was wondering if there are any data quality checks specific to the longitudinal stream (other than the standard ones listed for the cross-sectional analysis)? For example, is there a way to check the registration between TP1

Re: [Freesurfer] longitudinal processing QA, and problem with aparc+aseg

2009-09-10 Thread Bruce Fischl
Hi Ryan, is this only in the longitudinal stream? Sounds like a bug. If you upload the whole subject directory we'll take a look. Bruce On Thu, 10 Sep 2009 muet0...@umn.edu wrote: > Hello, > > I am running the longitudinal processing using version 4.5 and was > wondering if there are any data

Re: [Freesurfer] longitudinal processing QA, and problem with aparc+aseg

2009-09-11 Thread muet0005
Hi Bruce, Yes, this was with the longitudinal stream. The command I used was: recon-all -base 2829 -tp 20648 -tp 20995 -all I've uploaded these data to the ftp site: transfer/incoming/RLM_umn_problem_caseB.tgz tp1 20648 & tp2 20995 were fully processed using the cross-sectional stream (recon-