Re: [Freesurfer] Multiple inputs into recon-all -i

Hi Ye you only need to give it a single file from each run and it will find the rest. The only time you use -i more than once is if you acquired more than 1 T1-weighted volume. Definitely don't give it all the files that make up the same volume cheers Bruce On Mon, 24 Jun 2013, ye tian

Re: [Freesurfer] Multiple inputs into recon-all -i

Dear Bruce, Thank you very much for your suggestion, but I am afraid that I still don't quite understand you. In order to make it simple, suppose I have two files, Barba001.IMA and Barba002.IMA, coming directly from the scanner. Now if I enter *recon-all -s Barba -i Barba001.IMA* from the

Re: [Freesurfer] Multiple inputs into recon-all -i

Hi Ye, you would never have two files, as each file represents one image, or slice from a sequence. So you might have two sequences of files, say Barba001-1.img, Barba001-2.img... Barba001-256.ima, and Baraba002-1.ima, Barba002-2.ima Barba002-256.ima. Then you would use -i twice, once

Re: [Freesurfer] Multiple inputs into recon-all -i

Dear Bruce, Thank you very much! Sincerely, Ye On Mon, Jun 24, 2013 at 7:32 PM, Bruce Fischl fis...@nmr.mgh.harvard.eduwrote: Hi Ye, you would never have two files, as each file represents one image, or slice from a sequence. So you might have two sequences of files, say Barba001-1.img,