Dear Bruce, Thank you very much!
Sincerely, Ye On Mon, Jun 24, 2013 at 7:32 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu>wrote: > Hi Ye, > > you would never have two files, as each file represents one image, or > slice from a sequence. So you might have two sequences of files, say > Barba001-1.img, Barba001-2.img... Barba001-256.ima, and Baraba002-1.ima, > Barba002-2.ima.... Barba002-256.ima. Then you would use -i twice, once with > *one* file from each series (it wouldn't matter which one). > > > cheers > Bruce > > On Mon, 24 Jun 2013, ye tian wrote: > > Dear Bruce, >> Thank you very much for your suggestion, but I am afraid that I still >> don't >> quite understand you. >> >> In order to make it simple, suppose I have two files, Barba001.IMA and >> Barba002.IMA, coming directly from the scanner. >> >> Now if I enter recon-all -s Barba -i Barba001.IMA from the command >> line, I >> am only able to find 001.mgz in the Barba/mri/orig. Aren't I supposed >> to >> to find 001.mgz and 002.mgz? >> >> Thank you so much! >> >> Sincerely, >> Ye >> >> >> On Mon, Jun 24, 2013 at 5:41 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu >> > >> wrote: >> Hi Ye >> >> you only need to give it a single file from each run and it will >> find the rest. The only time you use -i more than once is if you >> acquired more than 1 T1-weighted volume. Definitely don't give >> it all the files that make up the same volume >> >> cheers >> Bruce >> On Mon, 24 Jun 2013, ye tian wrote: >> >> Dear David, >> I wonder whether there is a short cut for recon-all >> -s Barbara -i >> /path_to_data/scan1.dicom -i >> /path_to_data/scan2.dicom ... -i >> /path_to_data/scan100.dicom >> >> Recon-all -i takes only a single file as an input. A >> typical user, however, >> has hundreds of files for a particular subject. For >> example, the directory >> Barbara may have 100 scans. Therefore, the above >> command is necessary to >> include all the scans. >> >> I understand that I can write loops to a text file >> and then copy and paste >> to command line. However, I wonder whether there is >> a simpler way to input >> several files or even a directory to recon-all. >> >> Thank you very much! >> >> Sincerely, >> Ye >> >> >> >> >> The information in this e-mail is intended only for the person to whom >> it is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/**complianceline<http://www.partners.org/complianceline>. >> If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender >> and properly >> dispose of the e-mail. >> >> >> >>
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