Re: [Freesurfer] No intensity command

Hi Bruce, Thank you for your reply. I am looking at differences in WM intensity, but am concerned that the intensity normalization will reduce tissue differences in addition to addressing inhomogeneity from the MRI. The WM is normalized to an average of 110, but is there any way to keep the va

Re: [Freesurfer] No intensity command

Hi Sabrina what are you trying to accomplish? This is unlikely to work well (if at all), as we depend on the normalization cheers Bruce On Wed, 29 Jun 2016, Sabrina Yu wrote: Hello,  I have a question about taking out the intensity normalization commands in recon-all. I want to eliminate

[Freesurfer] No intensity command

Hello, I have a question about taking out the intensity normalization commands in recon-all. I want to eliminate all normalization steps so that the WM will not be set at an average of 110. Using the ReconAllDevTable (https://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllDevTable