[Freesurfer] Option -contrasurfreg in FreeSurfer 7.X

2022-11-07 Thread Francois Tadel, Mr [Affiliate]
External Email - Use Caution Hello, Does anybody know what happened to the recon-all option -contrasurfreg. It is still documented, but recon-all crashes when trying to use it ("ERROR: Flag -contrasurfreg unrecognized.") How can we obtain the files lh.rh.sphere.reg and rh.lh.sphe

Re: [Freesurfer] Option -contrasurfreg in FreeSurfer 7.X

2022-11-09 Thread Douglas N. Greve
I think I took it out because it was a bad idea (can't really remember). If you want to do cross-hemi analysis, better to use the xhemi tool https://surfer.nmr.mgh.harvard.edu/fswiki/Xhemi On 11/7/2022 8:46 AM, Francois Tadel, Mr [Affiliate] wrote: > External Email - Use Caution > > Hel

Re: [Freesurfer] Option -contrasurfreg in FreeSurfer 7.X

2022-11-09 Thread Francois Tadel, Mr [Affiliate]
External Email - Use Caution Hi Douglas, If I want to obtain outputs similar to -contrasurfreg, is it correct to execute the following commands? surfreg --s subjid --t fsaverage_sym --lh --no-annot --o rh.sphere.reg surfreg --s subjid --t fsaverage_sym --rh --no-annot --o lh.sph

Re: [Freesurfer] Option -contrasurfreg in FreeSurfer 7.X

2022-11-17 Thread Douglas N. Greve
I don't remember what contrasurfreg output was. Can you elaborate? On 11/9/2022 1:07 PM, Francois Tadel, Mr [Affiliate] wrote: > External Email - Use Caution > > Hi Douglas, > > If I want to obtain outputs similar to -contrasurfreg, is it correct to > execute the following commands? > > s