I don't remember what contrasurfreg output was. Can you elaborate? On 11/9/2022 1:07 PM, Francois Tadel, Mr [Affiliate] wrote: > External Email - Use Caution > > Hi Douglas, > > If I want to obtain outputs similar to -contrasurfreg, is it correct to > execute the following commands? > > surfreg --s subjid --t fsaverage_sym --lh --no-annot --o rh.sphere.reg > surfreg --s subjid --t fsaverage_sym --rh --no-annot --o lh.sphere.reg > > Thanks > Francois > > > Le 09/11/22 à 15:11, Douglas N. Greve a écrit : >> I think I took it out because it was a bad idea (can't really remember). >> If you want to do cross-hemi analysis, better to use the xhemi tool >> https://secure-web.cisco.com/12h2xYVNRK1us6DTqUfMZepui3ASWZKcLYMsX_0mSjM4TFS-ltYXY9QZtULkE3ucDST4hBFGPMv5pehcSMPlZU8--5mxtjpyt0YUrGD81mssJjoUaR-XtkFvhqsWdsyXluvaCxiHQDRsyUqCRmsrUoieJjYl9DSD30x6zFnpB4ZQdjyOxxKtdX0S5IfINJLnsqKyOYdH48BoKpXXaNRJad6MfB4kf7GIa4yhW9RDbTzP6YE29Dfd4kh3UyijFgsE2f5xu8b95sGVv6bhaXfqyraTvEeKvVJ_kjBOgJQWfY0EAYjyEfpl8yVgbhXhRY52Gz9pW6YToRURhHhXu7xTLvg/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FXhemi >> >> On 11/7/2022 8:46 AM, Francois Tadel, Mr [Affiliate] wrote: >>> Hello, >>> >>> Does anybody know what happened to the recon-all option -contrasurfreg. >>> It is still documented, but recon-all crashes when trying to use it >>> ("ERROR: Flag -contrasurfreg unrecognized.") >>> >>> How can we obtain the files lh.rh.sphere.reg and rh.lh.sphere.reg with >>> FreeSurfer 7.X? >>> >>> Thanks, >>> Francois > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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