you need to go back to the source data. At some point someone set or
changed the voxel size to the wrong thing. This can sometimes happen in
PET as reconstruction into volumes is not all that standardizeed
On 10/12/2016 06:12 PM, Matthieu Vanhoutte wrote:
>
> Thank you for your diagnosis Dougla
Thank you for your diagnosis Douglas. How could I get the voxel sizes right
from input nifti pet and mri data ?
Best regards,
Matthieu
Le 12 oct. 2016 10:05 PM, "Douglas N Greve" a
écrit :
> The problem appears to be that the PET or the MRI (or both) have
> incorrect voxel sizes (about 15%). Yo
The problem appears to be that the PET or the MRI (or both) have
incorrect voxel sizes (about 15%). You need to fix the problem. You can
get a decent registration using something like
mri_coreg --mov BS7_PET.lps.nii.gz --s 207118_FS_Filedrop --reg
dof9.wb.lta --dof 9 --no-ref-mask --ref mri/or
not yet. I'm on vacation until Wed, so it might be a while.
On 10/6/16 2:50 PM, Matthieu Vanhoutte wrote:
Hi Douglas,
Dis you have time to take a look at ?
Best regards,
Matthieu
Le 3 oct. 2016 6:25 PM, "Matthieu Vanhoutte"
mailto:matthieuvanhou...@gmail.com>> a
écrit :
Hi Douglas,
Hi Douglas,
Dis you have time to take a look at ?
Best regards,
Matthieu
Le 3 oct. 2016 6:25 PM, "Matthieu Vanhoutte"
a écrit :
> Hi Douglas,
>
> I have just sent it to you on Filedrop.
>
> Best regards,
> Matthieu
>
> 2016-10-03 17:45 GMT+02:00 Douglas Greve :
>
>> Can you tar up the FS anat
Hi Douglas,
I have just sent it to you on Filedrop.
Best regards,
Matthieu
2016-10-03 17:45 GMT+02:00 Douglas Greve :
> Can you tar up the FS anat analysis and BS7_PET.lps.nii.gz and send it to
> me on our filedrop?
>
> On 10/3/16 6:55 AM, Matthieu Vanhoutte wrote:
>
> Hi Douglas,
>
> Please fi
Can you tar up the FS anat analysis and BS7_PET.lps.nii.gz and send it
to me on our filedrop?
On 10/3/16 6:55 AM, Matthieu Vanhoutte wrote:
Hi Douglas,
Please find below the mri_coreg terminal output :
/
/
/$Id: mri_coreg.c,v 1.27 2016/04/30 15:11:49 greve Exp $/
/cwd /NAS/tupac/matthieu/FS5.
Hi Douglas,
Please find below the mri_coreg terminal output :
*$Id: mri_coreg.c,v 1.27 2016/04/30 15:11:49 greve Exp $*
*cwd /NAS/tupac/matthieu/FS5.3/207118_M0_2014-01-29/pet*
*cmdline mri_coreg --s 207118_M0_2014-01-29 --mov BS7_PET.lps.nii.gz --reg
Pet2T1.BS7.register.dof6.mri_coreg.lta --regd
Can you send the mri_coreg terminal output?
On 09/29/2016 11:19 AM, Matthieu Vanhoutte wrote:
> Dear Freesurfer's experts,
>
> I would like to register PET image onto T1 anatomical. I used
> bbregister with the following command and it failed :
> /bbregister --s SUBJID --init-fsl --t2 --mov PET
Dear Freesurfer's experts,
I would like to register PET image onto T1 anatomical. I used bbregister
with the following command and it failed :
*bbregister --s SUBJID --init-fsl --t2 --mov PET.nii.gz --reg
Pet2T1.register.dof6.dat --lta Pet2T1.register.dof6.lta --init-reg-out
Pet2T1.init.register.
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