Re: [Freesurfer] Pial Surfaces Cutting off Gyri

2010-04-07 Thread Sita Kakunoori
Hi Sherri, one of the control points seems to be in gray matter, which is probably causing this. Please try deleting it and rerunning autorecon2-cp. Sita. On Tue, 6 Apr 2010, Sherri Novis wrote: Hello brilliant and generous FS people, I have introduced a problem I cannot solve. I am

Re: [Freesurfer] Pial Surfaces Cutting off Gyri

2010-04-07 Thread Sherri Novis
: Sita Kakunoori s...@nmr.mgh.harvard.edu Sent: Apr 7, 2010 12:55 PM To: Sherri Novis echot...@earthlink.net Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Pial Surfaces Cutting off Gyri Hi Sherri, one of the control points seems to be in gray matter, which is probably causing

Re: [Freesurfer] Pial Surfaces Cutting off Gyri

2010-04-07 Thread Bruce Fischl
surface segmentation stats? Thank you - Sherri -Original Message- From: Sita Kakunoori s...@nmr.mgh.harvard.edu Sent: Apr 7, 2010 12:55 PM To: Sherri Novis echot...@earthlink.net Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Pial Surfaces Cutting off Gyri Hi Sherri

Re: [Freesurfer] Pial Surfaces Cutting off Gyri

2010-04-07 Thread Sherri Novis
others? Thank you - Sherri -Original Message- From: Bruce Fischl fis...@nmr.mgh.harvard.edu Sent: Apr 7, 2010 1:15 PM To: Sherri Novis echot...@earthlink.net Cc: Sita Kakunoori s...@nmr.mgh.harvard.edu, freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Pial Surfaces Cutting off Gyri