[Freesurfer] Pial surface with point-to-point correspondance between subjects

2014-10-29 Thread Alexandre Routier
Dear all, I would like to work with the pial surfaces of my database and more particularly with a point-to-point correspondance between each subject. But I didn't find how to do that, only for longitudinal analysis of a single subject which I am not interested. Thanks in advance for you help,

Re: [Freesurfer] Pial surface with point-to-point correspondance between subjects

2014-10-29 Thread Bruce Fischl
Hi Alexandre can you tell us what you want to do with the point-to-point correspondence? We don't usually map surfaces into a common space since we want to have uniform resolution/sampling in the individual coords. cheers Bruce On Wed, 29 Oct 2014, Alexandre Routier wrote: Dear all, I

Re: [Freesurfer] Pial surface with point-to-point correspondance between subjects

2014-10-29 Thread Alexandre Routier
Hello Bruce, I would like to build an atlas of subcortical structures and pial surface on my population of study. But given the anatomical complexity of the pial surface (and the number of points), I would like to use point-to-point correspondence so as to have a L^2 metric (I use another metric

Re: [Freesurfer] Pial surface with point-to-point correspondance between subjects

2014-10-29 Thread Douglas N Greve
I'm not sure what you mean by working with the pial surfaces with respect to point-to-point correspondence. Can you give more info? doug On 10/29/2014 06:29 AM, Alexandre Routier wrote: Dear all, I would like to work with the pial surfaces of my database and more particularly with a

Re: [Freesurfer] Pial surface with point-to-point correspondance between subjects

2014-10-29 Thread Alexandre Routier
What I wanted to say is that there is the exact number of points of the pial surface for each subject and if I look to the i-th vertex of the pial surface of a given subject, it should be located on the same area for another subject. Alexandre 2014-10-29 15:25 GMT+01:00 Douglas N Greve

Re: [Freesurfer] Pial surface with point-to-point correspondance between subjects

2014-10-29 Thread Douglas N Greve
This is not something we support. On 10/29/2014 10:32 AM, Alexandre Routier wrote: What I wanted to say is that there is the exact number of points of the pial surface for each subject and if I look to the i-th vertex of the pial surface of a given subject, it should be located on the same

Re: [Freesurfer] Pial surface with point-to-point correspondance between subjects

2014-10-29 Thread Alexandre Routier
Oh, okay. I thought this kind of data could be obtained since it exists for longitudinal analysis. Thanks for your answer anyway! 2014-10-29 15:35 GMT+01:00 Douglas N Greve gr...@nmr.mgh.harvard.edu: This is not something we support. On 10/29/2014 10:32 AM, Alexandre Routier wrote: What I

Re: [Freesurfer] Pial surface with point-to-point correspondance between subjects

2014-10-29 Thread Bruce Fischl
you can just compute the jacobian of the ?h.sphere.reg for deformation. I'm not sure I understand how you would use an L2 metric. There are tools in AFNI/SUMA for converting a freesurfer surface to a standard mesh that you could use cheers Bruce On Wed, 29 Oct 2014, Alexandre Routier wrote:

Re: [Freesurfer] Pial surface with point-to-point correspondance between subjects

2014-10-29 Thread Bruce Fischl
no, but I think SUMA does. Check it out. I'll cc Ziad so he can chime in. cheers Bruce On Wed, 29 Oct 2014, Douglas N Greve wrote: This is not something we support. On 10/29/2014 10:32 AM, Alexandre Routier wrote: What I wanted to say is that there is the exact number of points of the pial

Re: [Freesurfer] Pial surface with point-to-point correspondance between subjects

2014-10-29 Thread Alexandre Routier
Okay, thanks for the answer, I'll have a look on this software. Alexandre 2014-10-29 16:05 GMT+01:00 Bruce Fischl fis...@nmr.mgh.harvard.edu: no, but I think SUMA does. Check it out. I'll cc Ziad so he can chime in. cheers Bruce On Wed, 29 Oct 2014, Douglas N Greve wrote: This is not